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Alignment-free Sequence Analysis Tools

Alignment-free Sequence Analysis Tools diagram by Kolekar Pandurang, Wikimedia
Kolekar Pandurang, Wikimedia

Alignment-free sequence analyses have been applied to problems ranging from whole-genome phylogeny to the classification of protein families, identification of horizontally transferred genes, and detection of recombined sequences. Here is the latest research.

Top 20 most recent papers
Nature Genetics

Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer

Nature GeneticsFebruary 7, 2020
Kadir C AkdemirPCAWG Consortium
122
Journal of Thoracic Oncology : Official Publication of the International Association for the Study of Lung Cancer

STING pathway expression identifies non-small cell lung cancers with an immune-responsive phenotype

Journal of Thoracic Oncology : Official Publication of the International Association for the Study of Lung CancerFebruary 19, 2020
Carminia M Della CorteLauren A Byers
2
Microbiome

Separating the signal from the noise in metagenomic cell-free DNA sequencing

MicrobiomeFebruary 13, 2020
Philip BurnhamIwijn De Vlaminck
34
Conference Proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society

Skull Impact on the Ultrasound Beam Profile of Transcranial Focused Ultrasound Stimulation

Conference Proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology SocietyJanuary 18, 2020
Pin-Chien TsaiMehdi Kiani
IEEE Transactions on Bio-medical Engineering

Soft Nanomembrane Sensors and Flexible Hybrid Bioelectronics for Wireless Quantification of Blepharospasm

IEEE Transactions on Bio-medical EngineeringFebruary 25, 2020
Musa MahmoodWoon-Hong Yeo
Genes

Whole-Genome k -mer Topic Modeling AssociatesBacterial Families

GenesFebruary 21, 2020
Ernesto Borrayo-CarbajalHugo Vélez-Pérez
The American Journal of Psychiatry

An Electroencephalography Connectomic Profile of Posttraumatic Stress Disorder

The American Journal of PsychiatryJanuary 23, 2020
Russell T TollAmit Etkin
12
IEEE/ACM Transactions on Computational Biology and Bioinformatics

FLR: A Revolutionary Alignment-Free Similarity Analysis Methodology for DNA-Sequences

IEEE/ACM Transactions on Computational Biology and BioinformaticsJanuary 25, 2020
Ahmed Shawish, Belal Medhat
2
Frontiers in Molecular Neuroscience

Neural Activities in Multiple Rat Brain Regions in Lithium-Pilocarpine-Induced Status Epilepticus Model

Frontiers in Molecular NeuroscienceFebruary 5, 2020
Jingjing FanQun Wang

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