Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

January 7, 2022

RNA profiles reveal signatures of future health and disease in pregnancy.

Nature
Morten RasmussenThomas F McElrath
December 28, 2021
Preprint
Open Access

Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron

BioRxiv : the Preprint Server for Biology
H. A. ArjesA. L. Shiver
December 18, 2021
Preprint
Open Access

2FAST2Q: A general-purpose sequence search and counting program for FASTQ files

BioRxiv : the Preprint Server for Biology
A. BravoJan-Willem Veening
December 16, 2021

Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states.

Proceedings of the National Academy of Sciences of the United States of America
Alina IsakovaStephen R Quake
December 16, 2021
Open Access

Coronary blood vessels from distinct origins converge to equivalent states during mouse and human development.

ELife
Ragini PhansalkarKristy Red-Horse
December 10, 2021
Preprint
Open Access

Efficient pre-processing of Single-cell ATAC-seq data

BioRxiv : the Preprint Server for Biology
F. Gao, Lior Pachter
November 5, 2021

Composition and functional profiles of microbial communities in two geochemically and mineralogically different caves.

Applied Microbiology and Biotechnology
Sahib ZadaHui Wang
October 26, 2021
Preprint
Open Access

Hepatitis C Virus Infects and Perturbs Liver Stem Cells

BioRxiv : the Preprint Server for Biology
N. L. MeyersMelanie Ott
October 26, 2021

Temperature effect on polymerase fidelity.

The Journal of Biological Chemistry
Yuan XueStephen R Quake
October 7, 2021

Isoform cell-type specificity in the mouse primary motor cortex.

Nature
A Sina BooeshaghiLior Pachter
October 7, 2021

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.

Nature
Zizhen YaoEran A Mukamel
October 4, 2021

Single cell biology-a Keystone Symposia report.

Annals of the New York Academy of Sciences
Jennifer CableMerrit Romeike
September 30, 2021
Open Access

ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone.

BMC Biology
Amrita SrivathsanRudolf Meier
September 14, 2021
Open Access

RNA splicing programs define tissue compartments and cell types at single-cell resolution.

ELife
Julia Eve OlivieriJulia Salzman
September 6, 2021
Preprint
Open Access

Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experiments

BioRxiv : the Preprint Server for Biology
G. GorinLior Pachter
September 3, 2021

Quantifying rapid bacterial evolution and transmission within the mouse intestine.

Cell Host & Microbe
Kimberly S VasquezKerwyn Casey Huang
August 31, 2021
Review

The cell as a bag of RNA.

Trends in Genetics : TIG
Stephen R Quake
August 27, 2021
Open Access

A Rapid and Cost-Effective Identification of Invertebrate Pests at the Borders Using MinION Sequencing of DNA Barcodes.

Genes
Shamila Weerakoon AbeynayakeCherie Gambley
August 26, 2021
Preprint
Open Access

The Specious Art of Single-Cell Genomics

BioRxiv : the Preprint Server for Biology
T. ChariLior Pachter

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