Bioconductor Software Package: Human Cell Atlas

The open source software R / Bioconductor is used for statistical analysis and visualization, with continual generation of new analysis packages and updates. Find the latest research on Programming: Bioconductor Software Packages here.

January 9, 2021
Open Access

Transcriptomic landscaping of core genes and pathways of mild and severe psoriasis vulgaris

International Journal of Molecular Medicine
Saumya ChoudharyArun Kumar Jain
December 22, 2020

Methrix: an R/bioconductor package for systematic aggregation and analysis of bisulfite sequencing data

Bioinformatics
Anand MayakondaReka Toth
December 18, 2020
Preprint
Open Access

Megadepth: efficient coverage quantification for BigWigs and BAMs

BioRxiv : the Preprint Server for Biology
C. WilksBen Langmead
December 22, 2020
Open Access

Identification of Differentially Expressed Drought-Responsive Genes in Guar [Cyamopsis tetragonoloba (L.) Taub

International Journal of Genomics
Aref AlshameriAbdalrhaman M Salih
January 5, 2021
Open Access

BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis

PeerJ
Daniel Dimitrov, Quan Gu
January 13, 2021
Open Access

epihet for intra-tumoral epigenetic heterogeneity analysis and visualization

Scientific Reports
Xiaowen ChenSheng Li
January 9, 2021

shinyÉPICo: A graphical pipeline to analyze Illumina DNA methylation arrays

Bioinformatics
Octavio Morante-Palacios, Esteban Ballestar
January 6, 2021
Preprint
Open Access

Grouping of genomic markers in populations with family structure

ResearchSquare
Dörte WittenburgJan Klosa
December 11, 2020
Preprint
Open Access

CellMixS: quantifying and visualizing batch effects in single cell RNA-seq data

BioRxiv : the Preprint Server for Biology
A. LuetgeMark D Robinson
November 28, 2020
Review

Exploration of the mechanism of Zisheng Shenqi decoction against gout arthritis using network pharmacology

Computational Biology and Chemistry
Wen-Hao LiDe-You Jiang
December 22, 2020
Preprint
Open Access

scTypeR: Framework to accurately classify cell types in single-cell RNA-sequencing data

BioRxiv : the Preprint Server for Biology
V. Nguyen, Johannes Griss
December 9, 2020
Open Access

multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data

BMC Bioinformatics
Sebastian Canzler, Jörg Hackermüller
December 6, 2020
Preprint
Open Access

PipeMaster: inferring population divergence and demographic history with approximate Bayesian computation and supervised machine-learning in R

BioRxiv : the Preprint Server for Biology
Marcelo GeharaF. T. Burbrink
January 15, 2021
Open Access

A qualitative study on health care providers' experiences of providing comprehensive abortion care in Cox's Bazar, Bangladesh

Conflict and Health
Maria PerssonMarie Klingberg-Allvin
December 12, 2020
Open Access

Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework

Computational and Structural Biotechnology Journal
Patrick C N Martin, Nicolae Radu Zabet
November 28, 2020
Open Access

Multiple imputation and direct estimation for qPCR data with non-detects

BMC Bioinformatics
Valeriia SherinaMatthew N McCall

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