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Bioconductor Software Package: Human Cell Atlas

Bioconductor Software Package: Human Cell Atlas diagram by undefined

The open source software R / Bioconductor is used for statistical analysis and visualization, with continual generation of new analysis packages and updates. Find the latest research on Programming: Bioconductor Software Packages here.

Top 20 most recent papers
Nature Methods

Orchestrating single-cell analysis with Bioconductor

Nature MethodsDecember 2, 2019
Robert A AmezquitaStephanie C. Hicks
226
1
bioRxiv

ACTOR: a latent Dirichlet model to compare expressed isoform proportions to a reference panel

bioRxivNovember 26, 2019
Sean D. McCabeMichael I. Love
36
bioRxiv

Epiviz File Server: Query, Transform and Interactively Explore Data from Indexed Genomic Files

bioRxivDecember 5, 2019
Jayaram KancherlaHéctor Corrada Bravo
5
bioRxiv

An epigenetic clock for human skeletal muscle

bioRxivNovember 11, 2019
Sarah VoisinNir Eynon
59
Scientific Reports

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data

Scientific ReportsNovember 26, 2019
Nicolò ZanardiDavide Cangelosi
1
Algorithms for Molecular Biology : AMB

Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics

Algorithms for Molecular Biology : AMBNovember 15, 2019
Christophe AmbroiseNathalie Vialaneix
bioRxiv

AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

bioRxivDecember 2, 2019
Yadollah ShahryaryFrank Johannes
22
bioRxiv

clustifyr: An R package for automated single-cell RNA sequencing cluster classification

bioRxivNovember 26, 2019
Rui FuKent A. Riemondy
55
Adipocyte

Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes

AdipocyteDecember 1, 2019
Mahmoud Ahmed, Deok Ryong Kim
Aging

The long non-coding RNA SNHG12 promotes gastric cancer by activating the phosphatidylinositol 3-kinase/AKT pathway

AgingDecember 5, 2019
Rui ZhangJin-Shui Zhu
Cell Death & Disease

SKA3 Promotes tumor growth by regulating CDK2/P53 phosphorylation in hepatocellular carcinoma

Cell Death & DiseaseDecember 5, 2019
Yu-Chen HouLin-wei Wu
2
Stat : the ISI's Journal for Rapid Dissemination of Statistics Research

Set-based differential covariance testing for genomics

Stat : the ISI's Journal for Rapid Dissemination of Statistics ResearchAugust 6, 2019
Yi-Hui Zhou
Oncoimmunology

HVEM has a broader expression than PD-L1 and constitutes a negative prognostic marker and potential treatment target for melanoma

OncoimmunologySeptember 25, 2019
Nausicaa MalissenDaniel Olive
2
1
Oncology Letters

Identification of potential hub genes associated with the pathogenesis and prognosis of pancreatic duct adenocarcinoma using bioinformatics meta-analysis of multi-platform datasets

Oncology LettersDecember 1, 2019
Yufan MaXiao-Wei Tang
Journal of Cancer

Prognostic Value of Survival of MicroRNAs Signatures in Non-small Cell Lung Cancer

Journal of CancerOctober 6, 2019
Bo ChenJian-Qing Wu
OncoTargets and Therapy

CLK3 Is A Direct Target Of miR-144 And Contributes To Aggressive Progression In Hepatocellular Carcinoma

OncoTargets and TherapyNovember 5, 2019
Hua LiPeng-Li Zhou
OncoTargets and Therapy

Downregulation Of microRNA-133b And Its Clinical Value In Non-Small Cell Lung Cancer

OncoTargets and TherapyNovember 7, 2019
Guan-Yu Chen, Lin Ruan
Bioinformatics

Estimation of Eosinophil Cells in Cord Blood with References Based on Blood in Adults via Bayesian Measurement Error Modeling

BioinformaticsNovember 9, 2019
Yu JiangWilfried Joachim Jurgen Karmaus
8
BMC Cancer

Identification of differentially expressed lncRNAs and mRNAs in luminal-B breast cancer by RNA-sequencing

BMC CancerDecember 3, 2019
Cheng-Liang YuanYing-Ying Liu
Bioinformatics

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI

BioinformaticsNovember 9, 2019
Shijie C ZhengAndrew Erich Teschendorff
3

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