Bioconductor software package (programming)

The open source software R / Bioconductor is used for statistical analysis and visualization, with continual generation of new analysis packages and updates. Find the latest research on programming and Bioconductor here.

August 21, 2020

3D COMBO chrRNA-DNA-ImmunoFISH

Methods in Molecular Biology
Federica MarascaBeatrice Bodega
September 12, 2020

Incorporating prior knowledge into regularized regression

Bioinformatics
Chubing ZengJuan Pablo Lewinger
September 8, 2020
Open Access

COCOA: coordinate covariation analysis of epigenetic heterogeneity

Genome Biology
John T LawsonNathan C Sheffield
August 26, 2020
Preprint
Open Access

eQTpLot: an R package for the visualization and colocalization of eQTL and GWAS signals

BioRxiv : the Preprint Server for Biology
T. G. DrivasMarylyn DeRiggi Ritchie
September 4, 2020
Preprint
Open Access

preciseTAD: A machine learning framework for precise 3D domain boundary prediction at base-level resolution

BioRxiv : the Preprint Server for Biology
S. Stilianoudakis, Mikhail G Dozmorov
September 11, 2020
Open Access

Deciphering the Molecular Targets and Mechanisms of HGWD in the Treatment of Rheumatoid Arthritis via Network Pharmacology and Molecular Docking

Evidence-based Complementary and Alternative Medicine : ECAM
Wei LiuAihua Wang
July 22, 2020
Preprint
Open Access

rTASSEL: an R interface to TASSEL for association mapping of complex traits

BioRxiv : the Preprint Server for Biology
Brandon MonierE. S. Buckler
August 20, 2020
Preprint
Open Access

nanotatoR: A tool for enhanced annotation of genomic structural variants

BioRxiv : the Preprint Server for Biology
S. BhattacharyaEric Vilain
July 22, 2020
Open Access

SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering

BMC Bioinformatics
Kellen G CresswellMikhail G Dozmorov
September 15, 2020

PCAmatchR: a flexible R package for optimal case-control matching using weighted principal components

Bioinformatics
Derek W BrownMitchell J Machiela
September 16, 2020

locStra: Fast analysis of regional/global stratification in whole-genome sequencing studies

Genetic Epidemiology
Georg HahnNHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium
September 5, 2020
Open Access

mbend: an R package for bending non-positive-definite symmetric matrices to positive-definite

BMC Genetics
Mohammad Ali Nilforooshan
September 11, 2020
Open Access

multicrispr: gRNA design for prime editing and parallel targeting of thousands of targets

Life Science Alliance
Aditya M BhagwatMario Looso
August 6, 2020

hubViz: A Novel Tool for Hub-centric Visualization

Chemometrics and Intelligent Laboratory Systems : an International Journal Sponsored by the Chemometrics Society
Jin Hyun NamDongjun Chung
September 9, 2020
Preprint
Open Access

cytomapper: an R/Bioconductor package for visualisation of highly multiplexed imaging data

BioRxiv : the Preprint Server for Biology
Nils ElingB. Bodenmiller

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