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Bioconductor software package (programming)

Bioconductor software package (programming) diagram by Titz B et al.
Titz B et al.

The open source software R / Bioconductor is used for statistical analysis and visualization, with continual generation of new analysis packages and updates. Find the latest research on programming and Bioconductor here.

Top 20 most recent papers
Nature Methods

Orchestrating single-cell analysis with Bioconductor

Nature MethodsDecember 2, 2019
Robert A AmezquitaStephanie C. Hicks
233
1
F1000Research

RCy3: Network biology using Cytoscape from within R

F1000ResearchOctober 18, 2019
Julia Anne GustavsenAlex Pico
bioRxiv

ACTOR: a latent Dirichlet model to compare expressed isoform proportions to a reference panel

bioRxivNovember 26, 2019
Sean D. McCabeMichael I. Love
36
bioRxiv

Epiviz File Server: Query, Transform and Interactively Explore Data from Indexed Genomic Files

bioRxivDecember 5, 2019
Jayaram KancherlaHéctor Corrada Bravo
7
bioRxiv

An epigenetic clock for human skeletal muscle

bioRxivNovember 11, 2019
Sarah VoisinNir Eynon
59
Scientific Reports

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data

Scientific ReportsNovember 26, 2019
Nicolò ZanardiDavide Cangelosi
1
bioRxiv

AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

bioRxivDecember 2, 2019
Yadollah ShahryaryFrank Johannes
22
bioRxiv

clustifyr: An R package for automated single-cell RNA sequencing cluster classification

bioRxivNovember 26, 2019
Rui FuKent A. Riemondy
55
Stat : the ISI's Journal for Rapid Dissemination of Statistics Research

Set-based differential covariance testing for genomics

Stat : the ISI's Journal for Rapid Dissemination of Statistics ResearchAugust 6, 2019
Yi-Hui Zhou
Oncoimmunology

HVEM has a broader expression than PD-L1 and constitutes a negative prognostic marker and potential treatment target for melanoma

OncoimmunologySeptember 25, 2019
Nausicaa MalissenDaniel Olive
2
3
Journal of Cancer

Prognostic Value of Survival of MicroRNAs Signatures in Non-small Cell Lung Cancer

Journal of CancerOctober 6, 2019
Bo ChenJian-Qing Wu
Bioinformatics

Estimation of Eosinophil Cells in Cord Blood with References Based on Blood in Adults via Bayesian Measurement Error Modeling

BioinformaticsNovember 9, 2019
Yu JiangWilfried Joachim Jurgen Karmaus
8
1
BMC Cancer

Identification of differentially expressed lncRNAs and mRNAs in luminal-B breast cancer by RNA-sequencing

BMC CancerDecember 3, 2019
Cheng-Liang YuanYing-Ying Liu
Bioinformatics

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI

BioinformaticsNovember 9, 2019
Shijie C ZhengAndrew Erich Teschendorff
3
1
Biomedicine & Pharmacotherapy = Biomédecine & Pharmacothérapie

LINC00511 as a ceRNA promotes cell malignant behaviors and correlates with prognosis of hepatocellular carcinoma patients by modulating miR-195/EYA1 axis

Biomedicine & Pharmacotherapy = Biomédecine & PharmacothérapieNovember 12, 2019
Wen-Yu HuRui E Feng
2
Oncology Letters

Identification of potential hub genes associated with the pathogenesis and prognosis of pancreatic duct adenocarcinoma using bioinformatics meta-analysis of multi-platform datasets

Oncology LettersDecember 1, 2019
Yufan MaXiao-Wei Tang
Bioinformatics

Cerebro: Interactive visualization of scRNA-seq data

BioinformaticsNovember 25, 2019
Roman HilljeLucilla Luzi
5
Frontiers in Genetics

Copy Number Variation Mapping and Genomic Variation of Autochthonous and Commercial Turkey Populations

Frontiers in GeneticsOctober 29, 2019
Maria Giuseppina StrillacciAlessandro Bagnato
BioMed Research International

Study on miRNAs in Pan-Cancer of the Digestive Tract Based on the Illumina HiSeq System Data Sequencing

BioMed Research InternationalOctober 15, 2019
Chun-Hui LaiJiang-Hui Zeng
BMC Cancer

Dual oxidase 1 and NADPH oxidase 2 exert favorable effects in cervical cancer patients by activating immune response

BMC CancerNovember 9, 2019
Sang Yeon ChoHyuk Soo Eun
3

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