Cis- & Trans-Regulatory Elements

Cis-regulatory elements are DNA regions that regulate the transcription of neighbouring genes. Trans-regulatory elements are genomic loci that regulate the expression of distant genes by encoding transcription factors. Here is the latest research on CREs and TREs.

January 21, 2022

Distal regulation, silencers, and a shared combinatorial syntax are hallmarks of animal embryogenesis.

Genome Research
Paola Cornejo-ParamoEmily S Wong
January 21, 2022

The role of DNA methylation in genome-wide gene regulation during development.

Development
Howard CedarYitzhak Reizel
January 21, 2022
Preprint
Open Access

Identification and characterization of a dlx2b cis-regulatory element both sufficient and necessary for correct transcription during zebrafish tooth development

BioRxiv : the Preprint Server for Biology
William R JackmanA. L. Jowdry
January 20, 2022

The callus formation capacity of strawberry leaf explant is modulated by DNA methylation.

Horticulture Research
Decai LiuTingting Gu
January 20, 2022

Codon-Restrained Method for Both Eliminating and Creating Intragenic Bacterial Promoters.

ACS Synthetic Biology
Dominic Y LogelPaul R Jaschke
January 20, 2022

Convergent and lineage-specific genomic differences in limb regulatory elements in limbless reptile lineages.

Cell Reports
Juliana Gusson RoscitoMichael Hiller
January 19, 2022

TSS-seq of Toxoplasma gondii sporozoites revealed a novel motif in stage-specific promoters.

Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases
Taishi KidakaJunya Yamagishi
January 19, 2022

Genetic variations in the long control region of human papillomavirus type 16 isolates from India: implications for cervical carcinogenesis.

Journal of Medical Microbiology
Arati ManeUrmila Kulkarni-Kale
January 18, 2022
Preprint
Open Access

Genome-wide identification of preferentially located motifs in gene-proximal regions provides new insights into cis-regulatory sequences in plants

BioRxiv : the Preprint Server for Biology
J. RoziereS. Coursol
January 17, 2022

ATAC-seq reveals the landscape of open chromatin and cis-regulatory elements in the Phytophthora sojae genome.

Molecular Plant-microbe Interactions : MPMI
Zhichao ZhangYuanchao Wang
January 17, 2022

Circadian REV-ERBs repress E4bp4 to activate NAMPT-dependent NAD+ biosynthesis and sustain cardiac function.

Nature Cardiovascular Research
Pieterjan DierickxMitchell A Lazar
January 17, 2022

Genomic characterization of ZIP genes in pigeonpea (CcZIP) and their expression analysis among the genotypes with contrasting host response to pod borer.

Physiology and Molecular Biology of Plants : an International Journal of Functional Plant Biology
Atul NagJogeswar Panigrahi
January 15, 2022

A Congenital Anemia Reveals Distinct Targeting Mechanisms for Master Transcription Factor GATA1.

Blood
Leif LudwigVijay G Sankaran
January 14, 2022
Preprint
Open Access

Transposable elements contribute to the spatiotemporal microRNA landscape in human brain development

BioRxiv : the Preprint Server for Biology
C. J. PlayfootDidier Trono
January 14, 2022

Reciprocal modulation of long noncoding RNA EMS and p53 regulates tumorigenesis.

Proceedings of the National Academy of Sciences of the United States of America
Chenfeng WangYide Mei
January 14, 2022
Open Access

A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data.

Genome Biology
Gaoyang LiQi Liu

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