Computational Benchmarking Methods

Computational benchmarking studies aim to rigorously compare the performance of different bioinformatic methods using well-characterized datasets. Discover the latest research on Benchmarking Computational Methods here.

August 6, 2020
Open Access

NWPU-Crowd: A Large-Scale Benchmark for Crowd Counting and Localization

IEEE Transactions on Pattern Analysis and Machine Intelligence
Qi WangXuelong Li
August 6, 2020

DCHap: A divide-and-conquer haplotype phasing algorithm for third-generation sequences

IEEE/ACM Transactions on Computational Biology and Bioinformatics
Yanbo Li, Yu Lin
August 4, 2020

Time-distanced gates in long short-term memory networks

Medical Image Analysis
Riqiang GaoBennett A Landman
August 4, 2020

Hierarchical U-shape Attention Network for Salient Object Detection

IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society
Sanping ZhouNanning Zheng
August 4, 2020

Closed loop low rank echocardiographic artifact removal

IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control
Sushanth G SathyanarayanaJohn A Hossack
August 11, 2020

Reliable estimation of membrane curvature for cryo-electron tomography

PLoS Computational Biology
Maria SalferAntonio Martínez-Sánchez
August 11, 2020

Survivability modelling using Bayesian network for patients with first and secondary primary cancers

Computer Methods and Programs in Biomedicine
Kung-Min WangBunjira Makond
August 2, 2020

Benchmarking GPCR homology model template selection in combination with de novo loop generation

Journal of Computer-aided Molecular Design
Gregory L SzwabowskiAbby L Parrill
August 6, 2020
Open Access

Scenario-Based Verification of Uncertain MDPs

Tools and Algorithms for the Construction and Analysis of Systems : 26th International Conference, TACAS 2020, Held As Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2020, Dublin, Ireland, April 25-30, 2020, Proceedings.
Murat CubuktepeUfuk Topcu
August 4, 2020

PyramidTags: Context-, Time- and Word Order-Aware Tag Maps to Explore Large Document Collections

IEEE Transactions on Visualization and Computer Graphics
Johannes KnittelThomas Ertl
August 6, 2020
Open Access

Bridging the Gap Between Computational Photography and Visual Recognition

IEEE Transactions on Pattern Analysis and Machine Intelligence
Walter ScheirerCharles Otto
August 11, 2020

Data-Driven Evolutionary Algorithm With Perturbation-Based Ensemble Surrogates

IEEE Transactions on Cybernetics
Jian-Yu LiJun Zhang
August 8, 2020
Open Access

Predicting affective appraisals from facial expressions and physiology using machine learning

Behavior Research Methods
Laura S F Israel, Felix D Schönbrodt
July 31, 2020
Open Access

ADMIXPIPE: population analyses in ADMIXTURE for non-model organisms

BMC Bioinformatics
Steven M MussmannMichael E Douglas
August 6, 2020

Optimal robust search for parameter values of qualitative models of gene regulatory networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics
Liliana Ironi, Ettore Lanzarone
August 6, 2020

Evaluation of experimental protocols for shotgun whole-genome metagenomic discovery of antibiotic resistance genes

IEEE/ACM Transactions on Computational Biology and Bioinformatics
Ken Hung-On YuJoshua Ho
August 11, 2020
Open Access

A multilayer multi-configurational approach to efficiently simulate large-scale circuit-based quantum computers on classical machines

The Journal of Chemical Physics
Roman Ellerbrock, Todd J Martinez

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