de novo Genome Assembly

Despite advances in DNA sequencing technology, assembly of complex genomes remains a major challenge, particularly for genomes sequenced using short reads, which yield highly fragmented assemblies. Here is the latest research on de novo genome assembly.

July 17, 2020
Open Access

The Loss of the Inverted Repeat in the Putranjivoid Clade of Malpighiales

Frontiers in Plant Science
Dong-Min JinTing-Shuang Yi
July 1, 2020
Preprint
Open Access

Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

BioRxiv : the Preprint Server for Biology
Giulio FormentiE. D. Jarvis
July 23, 2020
Open Access

Reference Genome for the Highly Transformable Setaria viridis ME034V

G3 : Genes - Genomes - Genetics
Peter M ThielenJennifer H Wisecaver
July 2, 2020
Preprint
Open Access

Rapid, robust plasmid verification by de novo assembly of short sequencing reads

BioRxiv : the Preprint Server for Biology
J. E. GallegosJean Peccoud
August 11, 2020

The Acer truncatum genome provides insights into the nervonic acid biosynthesis

The Plant Journal : for Cell and Molecular Biology
Qiuyue MaQianzhong Li
August 4, 2020
Open Access

Comparative gut transcriptome analysis of Diatraea saccharalis in response to the dietary source

PloS One
Daniel D NoriegaMaria F Grossi-de-Sa
July 28, 2020

De novo assembly and characterization of transcriptome in the medicinal plant Euphorbia jolkini

Genes & Genomics
Neha Samir RoySoonok Kim
July 2, 2020
Preprint
Open Access

Long-read genome sequencing for the diagnosis of neurodevelopmental disorders

BioRxiv : the Preprint Server for Biology
S. M. HiattGregory M Cooper
July 16, 2020
Preprint
Open Access

Next generation cytogenetics: genome-imaging enables comprehensive structural variant detection for 100 constitutional chromosomal aberrations in 85 samples

BioRxiv : the Preprint Server for Biology
T. MantereL. El Khattabi
July 10, 2020
Open Access

Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling

PloS One
Sarah J VancurenMaternal Microbiome Legacy Project Team
July 8, 2020
Open Access

Fully Phased Sequence of a Diploid Human Genome Determined de Novo from the DNA of a Single Individual

G3 : Genes - Genomes - Genetics
Ilya SoiferMargaret A Roy

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