Enzyme Evolution

This feed focuses on molecular models of enzyme evolution and new approaches (such as adaptive laboratory evolution) to metabolic engineering of microorganisms. Here is the latest research.

January 11, 2022
Preprint
Open Access

Pan-genomic analysis of transcriptional modules across Salmonella Typhimurium reveals the regulatory landscape of different strains

BioRxiv : the Preprint Server for Biology
Y. YuanAnand V Sastry
January 8, 2022
Review

Streptomyces as Microbial Chassis for Heterologous Protein Expression.

Frontiers in Bioengineering and Biotechnology
Soonkyu HwangByung-Kwan Cho
January 5, 2022
Comment / Editorial
Open Access

Improvisational science.

Genome Biology
Itai Yanai, Martin Lercher
December 23, 2021
Preprint
Open Access

Characterization of antibiotic resistance in clinical isolates of Klebsiella pneumoniae in Denmark

BioRxiv : the Preprint Server for Biology
X. FangJonathan Monk
December 10, 2021
Open Access

Optimal dimensionality selection for independent component analysis of transcriptomic data.

BMC Bioinformatics
J. L. McConnAnand V Sastry
November 23, 2021

In Silico Prediction Methods for Site-Saturation Mutagenesis.

Methods in Molecular Biology
Ge Qu, Zhoutong Sun
November 19, 2021

proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms.

Nucleic Acids Research
Katherine T DeckerBernhard O Palsson
November 15, 2021
Open Access

Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius.

Frontiers in Microbiology
Siddharth M ChauhanAnand V Sastry
November 12, 2021

Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data.

ACS Synthetic Biology
Patrick V PhaneufAdam M Feist
November 4, 2021
Preprint
Open Access

Integration of physiologically relevant photosynthetic energy flows into whole genome models of light-driven metabolism

BioRxiv : the Preprint Server for Biology
J. T. BroddrickGraham Peers
October 13, 2021

Overview: Mycolactone , the Macrolide Toxin of Mycobacterium ulcerans.

Methods in Molecular Biology
Katharina Röltgen, Gerd Pluschke
September 28, 2021
Open Access

RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics.

PLoS Genetics
Donghui ChoeByung-Kwan Cho
September 24, 2021
Preprint
Open Access

Origin of electroneutrality in living system

BioRxiv : the Preprint Server for Biology
A. Akbari, Bernhard O Palsson
September 22, 2021
Review

Exploiting enzyme evolution for computational protein design.

Trends in Biochemical Sciences
Gaspar P PintoShina Caroline Lynn Kamerlin
September 14, 2021

Interdependence of a mechanosensitive anion channel and glutamate receptors in distal wound signaling.

Science Advances
Jacob Moe-LangeThomas J Kleist

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