European Bioinformatics Institute

European Bioinformatics Institute focuses both on data resource development and investigator-driven research in the field of bioinformatics. Follow this feed to stay up to date on research by this institute.

March 24, 2020

Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes

Nature Methods
Davis J McCarthySarah A Teichmann
February 14, 2020

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

Genome Biology
Christian H HollandJulio Saez-Rodriguez
February 12, 2020
Open Access

Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

Nature Communications
Anna S E CuomoOliver Stegle
June 12, 2020
Open Access

Properties of structural variants and short tandem repeats associated with gene expression and complex traits

Nature Communications
David JakuboskyKelly A Frazer
February 9, 2020
Review
Open Access

Eleven grand challenges in single-cell data science

Genome Biology
David LähnemannAlexander Schönhuth
July 1, 2020
Preprint
Open Access

Light into the darkness: Unifying the known and unknown coding sequence space in microbiome analyses

BioRxiv : the Preprint Server for Biology
C. VanniAntonio Fernandez-Guerra
February 7, 2020
Preprint
Open Access

BOSS-RUNS: a flexible and practical dynamic read sampling framework for nanopore sequencing

BioRxiv : the Preprint Server for Biology
Nicola De MaioNick Goldman
February 11, 2020
Open Access

The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers

Acta Crystallographica. Section D, Structural Biology
Emma Ruoqi XuMarko Hyvönen
July 22, 2020
Open Access

A unified catalog of 204,938 reference genomes from the human gut microbiome

Nature Biotechnology
Alexandre AlmeidaRobert D Finn
June 21, 2020
Open Access

COVID-19 pandemic reveals the peril of ignoring metadata standards

Scientific Data
Lynn M SchrimlRamona Walls
July 15, 2020

Investigating higher-order interactions in single-cell data with scHOT

Nature Methods
Shila GhazanfarJean Yee Hwa Yang
June 19, 2020
Preprint
Open Access

Common genetic associations between age-related diseases

MedRxiv : the Preprint Server for Health Sciences
Handan Melike DönertaşJanet M Thornton
July 26, 2020
Preprint
Open Access

Genetic variation affects morphological retinal phenotypes extracted from UK Biobank Optical Coherence Tomography images

MedRxiv : the Preprint Server for Health Sciences
Hannah CurrantAnthony P. Khawaja
February 7, 2020
Open Access

Genomic basis for RNA alterations in cancer

Nature
PCAWG Transcriptome Core GroupPCAWG Consortium
March 7, 2020
Open Access

Temporal changes in the gene expression heterogeneity during brain development and aging

Scientific Reports
Ulaş IşıldakHandan Melike Dönertaş
February 15, 2020
Open Access

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

Wellcome Open Research
Martin HuntZamin Iqbal
May 20, 2020

Spatial competition shapes the dynamic mutational landscape of normal esophageal epithelium

Nature Genetics
Bartomeu ColomPhilip H Jones
May 19, 2020
Open Access

Progress, Challenges, and Surprises in Annotating the Human Genome

Annual Review of Genomics and Human Genetics
Daniel R ZerbinoPaul Flicek
March 10, 2020

The single-cell eQTLGen consortium

ELife
Mgp van der WijstL Franke

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