3D+t morphological processing: applications to embryogenesis image analysis

IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society
M A Luengo-OrozA Santos

Abstract

We propose to directly process 3D + t image sequences with mathematical morphology operators using a new classification of the 3D+t structuring elements. Several methods (filtering, tracking, segmentation) dedicated to the analysis of 3D + t datasets of zebrafish embryogenesis are introduced and validated through a synthetic dataset. Then, we illustrate the application of these methods to the analysis of datasets of zebrafish early development acquired with various microscopy techniques. This processing paradigm produces spatio-temporal coherent results as it benefits from the intrinsic redundancy of the temporal dimension and minimizes the needs for human intervention in semi-automatic algorithms.

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Citations

Jun 14, 2013·Zebrafish·Ralf MikutNadine Peyriéras
Sep 19, 2012·Cellular Microbiology·Christophe Zimmer
Jun 14, 2012·Birth Defects Research. Part C, Embryo Today : Reviews·Carlos Castro-GonzálezAndrés Santos
Sep 30, 2014·Genesis : the Journal of Genetics and Development·Michael Veeman, Wendy Reeves
Mar 30, 2017·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Alexandre C DufourJean-Christophe Olivo-Marin

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