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A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations

bioRxiv

Dec 20, 2013

Vincent Frappier, Rafael J Najmanovich

Abstract

Normal mode analysis (NMA) methods are widely used to study dynamic aspects of protein structures. Two critical components of NMA methods are coarse-graining in the level of simplification used to represent protein structures and the choice of potential energy functional form. There is ...read more

Mentioned in this Paper

Omega-N-Methylarginine
Energy Transfer
Protein Dynamics
Drug Interactions
Structure
Dace
Simulation
Learning
Acids
Analysis
9
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A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations

bioRxiv

Dec 20, 2013

Vincent Frappier, Rafael J Najmanovich

PMID: 990001495

DOI: 10.1101/001495

Abstract

Normal mode analysis (NMA) methods are widely used to study dynamic aspects of protein structures. Two critical components of NMA methods are coarse-graining in the level of simplification used to represent protein structures and the choice of potential energy functional form. There is ...read more

Mentioned in this Paper

Omega-N-Methylarginine
Energy Transfer
Protein Dynamics
Drug Interactions
Structure
Dace
Simulation
Learning
Acids
Analysis
9

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