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A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations

bioRxiv

Dec 20, 2013

Vincent Frappier, Rafael Josef Najmanovich

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Abstract

Normal mode analysis (NMA) methods are widely used to study dynamic aspects of protein structures. Two critical components of NMA methods are coarse-graining in the level of simplification used to represent protein structures and the choice of potential energy functional form. There is ...read more

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  • A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations

    bioRxiv

    Dec 20, 2013

    Vincent Frappier, Rafael Josef Najmanovich

    PMID: 990001495

    DOI: 10.1101/001495

    Abstract

    Normal mode analysis (NMA) methods are widely used to study dynamic aspects of protein structures. Two critical components of NMA methods are coarse-graining in the level of simplification used to represent protein structures and the choice of potential energy functional form. There is ...read more

    10

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