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A comparative evaluation of genome assembly reconciliation tools

Genome Biology

May 20, 2017

Hind AlhakamiStefano Lonardi

Abstract

The majority of eukaryotic genomes are unfinished due to the algorithmic challenges of assembling them. A variety of assembly and scaffolding tools are available, but it is not always obvious which tool or parameters to use for a specific genome size and complexity. It is, therefore, co...read more

Mentioned in this Paper

Size
GAGE
Genome
Genome Assembly Sequence
Evaluation
Genome Mapping
Computer Programs and Programming
Literature
Sequence Determinations, DNA
High-Throughput Nucleotide Sequencing
48
1
99
Paper Details
References
  • References51
  • Citations3
12345...
  • References51
  • Citations3
1

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A comparative evaluation of genome assembly reconciliation tools

Genome Biology

May 20, 2017

Hind AlhakamiStefano Lonardi

PMID: 28521789

DOI: 10.1186/s13059-017-1213-3

Abstract

The majority of eukaryotic genomes are unfinished due to the algorithmic challenges of assembling them. A variety of assembly and scaffolding tools are available, but it is not always obvious which tool or parameters to use for a specific genome size and complexity. It is, therefore, co...read more

Mentioned in this Paper

Size
GAGE
Genome
Genome Assembly Sequence
Evaluation
Genome Mapping
Computer Programs and Programming
Literature
Sequence Determinations, DNA
High-Throughput Nucleotide Sequencing
48
1
99

Similar Papers Found In These Feeds

Non-coding Variants in Cancer

Mutations, single nucleotide variants and large genomic rearrangements, in non-coding regions of the genome can have severe consequences such as disruption of transcription factor binding sites and functions of non-coding RNAs and can impact tumor development and progression. Here is the latest research.

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Related Papers

BMC Bioinformatics

GAM-NGS: genomic assemblies merger for next generation sequencing

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PloS One

CISA: contig integrator for sequence assembly of bacterial genomes

PloS OneApril 5, 2013
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Paper Details
References
  • References51
  • Citations3
12345...
  • References51
  • Citations3
1
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