A comparison of brain gene expression levels in domesticated and wild animals.

PLoS Genetics
Frank W AlbertSvante Pääbo

Abstract

Domestication has led to similar changes in morphology and behavior in several animal species, raising the question whether similarities between different domestication events also exist at the molecular level. We used mRNA sequencing to analyze genome-wide gene expression patterns in brain frontal cortex in three pairs of domesticated and wild species (dogs and wolves, pigs and wild boars, and domesticated and wild rabbits). We compared the expression differences with those between domesticated guinea pigs and a distant wild relative (Cavia aperea) as well as between two lines of rats selected for tameness or aggression towards humans. There were few gene expression differences between domesticated and wild dogs, pigs, and rabbits (30-75 genes (less than 1%) of expressed genes were differentially expressed), while guinea pigs and C. aperea differed more strongly. Almost no overlap was found between the genes with differential expression in the different domestication events. In addition, joint analyses of all domesticated and wild samples provided only suggestive evidence for the existence of a small group of genes that changed their expression in a similar fashion in different domesticated species. The most extreme of these s...Continue Reading

Citations

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Datasets Mentioned

BETA
E-MTAB-1249

Methods Mentioned

BETA
RNA-seq
PCA
RNASeq
Illumina sequencing
PCR

Software Mentioned

DESeq
BWA
R package edgeR
UCSC genome browser
TopHat
samtools
custom
R
Cufflinks
Ensembl

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