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A Comparison of Peak Callers Used for DNase-seq Data

bioRxiv

Mar 27, 2014

Hashem KoohyTim J P Hubbard

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Abstract

Genome-wide profiling of open chromatin regions using DNase I and high-throughput sequencing (DNase- seq) is an increasingly popular approach for finding and studying regulatory elements. A variety of algorithms have been developed to identify regions of open chromatin from raw sequence...read more

Mentioned in this Paper

Magnetic Cell Separation System
Transcription Factor Binding
Study
Chromatin
MARCKS gene
Molecular Probe Techniques
Genetic Hotspot
High-Throughput RNA Sequencing
Base Sequence
Deoxyribonuclease I
9
3
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  • A Comparison of Peak Callers Used for DNase-seq Data

    bioRxiv

    Mar 27, 2014

    Hashem KoohyTim J P Hubbard

    PMID: 990003608

    DOI: 10.1101/003608

    Abstract

    Genome-wide profiling of open chromatin regions using DNase I and high-throughput sequencing (DNase- seq) is an increasingly popular approach for finding and studying regulatory elements. A variety of algorithms have been developed to identify regions of open chromatin from raw sequence...read more

    Mentioned in this Paper

    Magnetic Cell Separation System
    Transcription Factor Binding
    Study
    Chromatin
    MARCKS gene
    9
    3
    Paper Details
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