A continuously changing selective context on microbial communities associated with fish, from egg to fork

Evolutionary Applications
Nicolas Derome, Marie Filteau

Abstract

Fast increase of fish aquaculture production to meet consumer demands is accompanied by important ecological concerns such as disease outbreaks. Meanwhile, food waste is an important concern with fish products since they are highly perishable. Recent aquaculture and fish product microbiology, and more recently, microbiota research, paved the way to a highly integrated approach to understand complex relationships between host fish, product and their associated microbial communities at health/disease and preservation/spoilage frontiers. Microbial manipulation strategies are increasingly validated as promising tools either to replace or to complement traditional veterinary and preservation methods. In this review, we consider evolutionary forces driving fish microbiota assembly, in particular the changes in the selective context along the production chain. We summarize the current knowledge concerning factors governing assembly and dynamics of fish hosts and food microbial communities. Then, we discuss the current microbial community manipulation strategies from an evolutionary standpoint to provide a perspective on the potential for risks, conflict and opportunities. Finally, we conclude that to harness evolutionary forces in the...Continue Reading

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Citations

Jun 20, 2021·Comprehensive Reviews in Food Science and Food Safety·Nikheel Bhojraj RathodFatih Ozogul

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Methods Mentioned

BETA
bioprotection
amplicon sequencing

Software Mentioned

RAS

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