A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it

Metabolomics : Official Journal of the Metabolomic Society
Rachel A Spicer, Christoph Steinbeck

Abstract

Data sharing is being increasingly required by journals and has been heralded as a solution to the 'replication crisis'. (i) Review data sharing policies of journals publishing the most metabolomics papers associated with open data and (ii) compare these journals' policies to those that publish the most metabolomics papers. A PubMed search was used to identify metabolomics papers. Metabolomics data repositories were manually searched for linked publications. Journals that support data sharing are not necessarily those with the most papers associated to open metabolomics data. Further efforts are required to improve data sharing in metabolomics.

References

Dec 6, 2011·Nucleic Acids Research·Tanya BarrettJames Ostell
Mar 31, 2012·Nature·C Glenn Begley, Lee M Ellis
Dec 28, 2012·Nature Reviews. Genetics·Johan Rung, Alvis Brazma
Oct 11, 2013·PeerJ·Heather A Piwowar, Todd J Vision
Nov 23, 2013·Nucleic Acids Research·Adam FaulconbridgeHelen Parkinson
Apr 15, 2014·Nature Biotechnology·Juan A VizcaínoHenning Hermjakob
Jun 27, 2015·Nature Genetics·Ilkka LappalainenPaul Flicek
Sep 1, 2015·Science·UNKNOWN Open Science Collaboration
Oct 10, 2015·Proteomics·Marc VaudelHarald Barsnes
Jul 9, 2016·ELife·Erin C McKiernanTal Yarkoni
May 10, 2017·Nature Biotechnology·Yasset Perez-RiverolHenning Hermjakob

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Citations

Feb 5, 2019·GigaScience·Mark N WassMartin Michaelis
Sep 10, 2019·Mass Spectrometry Reviews·Ana Margarida RodriguesCarla António
Nov 18, 2018·Electrophoresis·Biswapriya B Misra, Subhashree Mohapatra
Nov 27, 2019·Metabolites·Ana M RodriguesCarla António
Mar 5, 2019·Metabolomics : Official Journal of the Metabolomic Society·Nguyen Phuoc LongSung Won Kwon
Mar 3, 2018·Journal of Natural Products·Louis-Félix NothiasPieter C Dorrestein

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Software Mentioned

PLoS
Metabolomics
MeRy
OmicsDI
MetaPhen
MetaboLights
GNPS
Metabolomics Workbench
PLoS One
ProteomeXchange

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