A multiomics approach to study the microbiome response to phytoplankton blooms

Applied Microbiology and Biotechnology
Liyan Song

Abstract

Phytoplankton blooms are predictable features of marine and freshwater habitats. Despite a good knowledge base of the environmental factors controlling blooms, complex interactions between the bacterial and archaeal communities and phytoplankton bloom taxa are only now emerging. Here, the current research on bacterial community's structural and functional response to phytoplankton blooms is reviewed and discussed and further research is proposed. More attention should be paid on structure and function of autotrophic bacteria and archaea during phytoplankton blooms. A multiomics integration approach is needed to investigate bacterial and archaeal communities' diversity, metabolic diversity, and biogeochemical functions of microbial interactions during phytoplankton blooms.

References

Feb 2, 2000·Applied and Environmental Microbiology·L RiemannF Azam
Mar 10, 2001·Nature·L J Rothschild, R L Mancinelli
Sep 7, 2001·Annual Review of Microbiology·G A Kowalchuk, J R Stephen
Oct 27, 2001·Applied and Environmental Microbiology·A E AllenS Zani
May 6, 2003·Environmental Science and Pollution Research International·Val H Smith
Jun 14, 2003·TheScientificWorldJournal·H W PaerlJ Dyble
Apr 7, 2004·Science·J Craig VenterHamilton O Smith
Nov 6, 2004·Applied and Environmental Microbiology·Jarone PinhassiCèlia Marrasé
May 12, 2005·Nature Reviews. Microbiology·Edward F DeLong
Sep 16, 2005·Nature·Edward F DeLong, David M Karl
Sep 28, 2005·Proceedings of the National Academy of Sciences of the United States of America·Christopher A FrancisBrian B Oakley
Dec 8, 2005·FEMS Microbiology Ecology·Maria Montserrat SalaMarta Estrada
Apr 17, 2007·Applied and Environmental Microbiology·Alexander Eiler, Stefan Bertilsson
Oct 6, 2007·Science·Julie A HuberMitchell L Sogin
Mar 5, 2008·Proceedings of the National Academy of Sciences of the United States of America·Jorge Frias-LopezEdward F Delong
Aug 1, 2008·Proceedings of the National Academy of Sciences of the United States of America·David W SchindlerS E M Kasian
Sep 5, 2008·The ISME Journal·Sarah M SowellStephen J Giovanonni
Nov 1, 2008·Environmental Microbiology·Mike S M Jetten
Dec 2, 2008·Nature·Peter J TurnbaughJeffrey I Gordon
Feb 21, 2009·Science·Daniel J ConleyGene E Likens
Dec 1, 2003·FEMS Microbiology Ecology·Hans W PaerlLexia M Valdes
Dec 3, 2009·Proteomics·Thomas Schneider, Kathrin Riedel
Oct 12, 2010·Science·Donald E CanfieldPaul G Falkowski
Mar 5, 2011·Microbiology and Molecular Biology Reviews : MMBR·Ryan J NewtonStefan Bertilsson
Sep 3, 2011·Science·Gary D WuJames D Lewis
Nov 23, 2011·Biochemical Society Transactions·Bao-lan HuPing Zheng
Dec 6, 2011·Applied and Environmental Microbiology·Harry R HarhangiHuub J M Op den Camp
Jun 12, 2012·Applied and Environmental Microbiology·Elizabeth FrenchAnnette Bollmann
Jun 16, 2012·Nature·UNKNOWN Human Microbiome Project Consortium
Dec 26, 2012·Frontiers in Microbiology·Ashley ShadeJo Handelsman
Sep 1, 1994·Microbial Ecology·D L Kirchman
Aug 20, 2014·Nature Reviews. Microbiology·Alison BuchanJosé M González
Sep 4, 2014·BMC Biology·Jack A GilbertRob Knight
May 23, 2015·Science·Shinichi SunagawaPeer Bork

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Methods Mentioned

BETA
electrophoresis
environmental stress

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