A novel real-time PCR assay panel for detection of common respiratory pathogens in a convenient, strip-tube array format

Journal of Virological Methods
Mohammad Rubayet HasanPeter Tilley

Abstract

Commercial multiplex assays, built on different chemistries and platforms are widely available for simultaneous detection of pathogens that cause respiratory infections. However, these tests are often difficult to implement in a resource limited setting because of high cost. In this study, we developed and validated a method for simultaneous testing of common respiratory pathogens (Respanel) by real-time PCR in a convenient, strip-tube array format. Primers and probes for sixteen PCR assays were selected from the literature or newly designed. Following optimization of individual PCR assays, strip-tube arrays were prepared by dispensing primer-probe mixes (PPM) into two sets of 8-tube strips. Nucleic acid extracts from specimens were mixed with PCR master mix, and dispensed column-wise into 2 × 8-wells of a 96-well plate. PPMs from strip-tubes were then added to the wells using a multichannel pipette for real-time PCR. Individual PCR assays were optimized using previously known specimens (n = 394) with 91%-100% concordance with culture, DFA or PCR results. Respanel was then tested in a routine manner at two different sites using specimens (n = 147) previously tested by Qiagen Resplex I&II or Fast-Track Diagnostics Respiratory Pa...Continue Reading

Citations

Apr 10, 2020·Critical Reviews in Food Science and Nutrition·József LehelPéter Laczay
Apr 4, 2021·Animals : an Open Access Journal From MDPI·Carmen López-VázquezCarlos P Dopazo

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Methods Mentioned

BETA
PCR
flow cytometry

Software Mentioned

GraphPad QuickCalcs
MedCalc
Primer Express
Respanel
GraphPad

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