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A standard variation file format for human genome sequences

Genome Biology

Aug 28, 2010

Martin G ReeseKaren Eilbeck

Abstract

Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human ge...read more

Mentioned in this Paper

Twitter Messaging
DNA Microarray Format
Exons
Genome
Caenorhabditis elegans
Transcription Initiation Site
Ncbi Taxonomy
Gene Deletion Abnormality
Gasping for Breath
Gene Mutation
2
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Paper Details
References
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A standard variation file format for human genome sequences

Genome Biology

Aug 28, 2010

Martin G ReeseKaren Eilbeck

PMID: 20796305

DOI: 10.1186/gb-2010-11-8-r88

Abstract

Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human ge...read more

Mentioned in this Paper

Twitter Messaging
DNA Microarray Format
Exons
Genome
Caenorhabditis elegans
Transcription Initiation Site
Ncbi Taxonomy
Gene Deletion Abnormality
Gasping for Breath
Gene Mutation
2
173

Similar Papers Found In These Feeds

Open Access Genomics Journals

Discover the latest genomics research in this collection of the top open access genomics journals.

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The variant call format and VCFtools

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Paper Details
References
  • References32
  • Citations48
1234
  • References32
  • Citations48
12345
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