PMID: 11911710Mar 26, 2002Paper

A versatile structural domain analysis server using profile weight matrices

Journal of Chemical Information and Computer Sciences
Steffen SchmidtThomas Dandekar

Abstract

The WEB tool "AnDom" assigns to a given protein sequence all experimentally determined structural domains contained within it, including multidomain and large proteins. The server uses profile specific matrices from custom generated multiple sequence alignments of all known SCOP domains (SCOP version 1.50). Prediction time is short allowing numerous applications for structural genomics including investigation of complex eucaryotic protein families. The WWW server is at http://www.bork.embl-heidelberg.de/AnDom, and profiles can be downloaded at ftp.bork.embl-heidelberg.de/pub/users/ schmidt/AnDom.

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Citations

Jun 26, 2003·Nucleic Acids Research·Peter Bengert, Thomas Dandekar
May 29, 2004·Pharmacogenomics·Wilma ZiebuhrThomas Dandekar
Apr 21, 2005·Protein Science : a Publication of the Protein Society·Parantu K ShahRobert B Russell
Apr 9, 2016·Database : the Journal of Biological Databases and Curation·Meik KunzThomas Dandekar
Apr 29, 2020·Nature Communications·Adam W WhisnantLars Dölken

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