Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems

Human Brain Mapping
Jianxiao WuB T Thomas Yeo

Abstract

The results of most neuroimaging studies are reported in volumetric (e.g., MNI152) or surface (e.g., fsaverage) coordinate systems. Accurate mappings between volumetric and surface coordinate systems can facilitate many applications, such as projecting fMRI group analyses from MNI152/Colin27 to fsaverage for visualization or projecting resting-state fMRI parcellations from fsaverage to MNI152/Colin27 for volumetric analysis of new data. However, there has been surprisingly little research on this topic. Here, we evaluated three approaches for mapping data between MNI152/Colin27 and fsaverage coordinate systems by simulating the above applications: projection of group-average data from MNI152/Colin27 to fsaverage and projection of fsaverage parcellations to MNI152/Colin27. Two of the approaches are currently widely used. A third approach (registration fusion) was previously proposed, but not widely adopted. Two implementations of the registration fusion (RF) approach were considered, with one implementation utilizing the Advanced Normalization Tools (ANTs). We found that RF-ANTs performed the best for mapping between fsaverage and MNI152/Colin27, even for new subjects registered to MNI152/Colin27 using a different software tool ...Continue Reading

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Citations

Dec 4, 2020·Human Brain Mapping·Melanie A Matyi, Jeffrey M Spielberg
Jan 16, 2021·Clinical Neurophysiology : Official Journal of the International Federation of Clinical Neurophysiology·Karl-Heinz NenningSilvia B Bonelli
Mar 13, 2021·NeuroImage·Ruiyang GeFidel Vila-Rodriguez
Jun 29, 2021·Cerebral Cortex·Minho Shin, Hyeon-Ae Jeon

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Software Mentioned

fs
RF
ANTs
MRIcron
mri
FreeSurfer recon all
FreeSurfer
MNIsurf
LR
FreeSurfer fsaverage

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