Adaptation of Escherichia coli to respiratory conditions: regulation of gene expression

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Adaptation of Escherichia coli to respiratory conditions: regulation of gene expression

Abstract

References

The requirement of ArcA and Fnr for peak expression of the cyd operon in Escherichia coli under microaerobic conditions

Two global regulators repress the anaerobic expression of MnSOD in Escherichia coli::Fur (ferric uptake regulation) and Arc (aerobic respiration control)

Nitrate regulation of anaerobic respiratory gene expression in narX deletion mutants of Escherichia coli K-12

Requirement for terminal cytochromes in generation of the aerobic signal for the arc regulatory system in Escherichia coli: study utilizing deletions and lac fusions of cyo and cyd

Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product

Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria

The arcB gene of Escherichia coli encodes a sensor-regulator protein for anaerobic repression of the arc modulon

FNR and its role in oxygen-regulated gene expression in Escherichia coli

Nitrate- and molybdenum-independent signal transduction mutations in narX that alter regulation of anaerobic respiratory genes in Escherichia coli

Multiple regulatory elements for the glpA operon encoding anaerobic glycerol-3-phosphate dehydrogenase and the glpD operon encoding aerobic glycerol-3-phosphate dehydrogenase in Escherichia coli: further characterization of respiratory control

Characterization of a cis regulatory DNA element necessary for formate induction of the formate dehydrogenase gene (fdhF) of Escherichia coli

An overlap between osmotic and anaerobic stress responses: a potential role for DNA supercoiling in the coordinate regulation of gene expression

arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways.

The narL gene product activates the nitrate reductase operon and represses the fumarate reductase and trimethylamine N-oxide reductase operons in Escherichia coli

Influence of nar (nitrate reductase) genes on nitrate inhibition of formate-hydrogen lyase and fumarate reductase gene expression in Escherichia coli K-12

Conserved domains in bacterial regulatory proteins that respond to environmental stimuli

Requirement of Fnr and NarL functions for nitrate reductase expression in Escherichia coli K-12.

Citations

Effect of Vitreoscilla hemoglobin dosage on microaerobic Escherichia coli carbon and energy metabolism

Intracellular expression of Vitreoscilla hemoglobin modifies microaerobic Escherichia coli metabolism through elevated concentration and specific activity of cytochrome o

Characterization of an oxygen-dependent inducible promoter system, the nar promoter, and Escherichia coli with an inactivated nar operon

Fed-batch cultivation of an oxygen-dependent inducible promoter system, the nar promoter in Escherichia coli with an inactivated nar operon

Development and characterization of an oxygen-dependent inducible promoter system, the modified nar promoter in a mutant Escherichia coli

Poly(3-hydroxybutyrate) synthesis from glycerol by a recombinant Escherichia coli arcA mutant in fed-batch microaerobic cultures

Coenzyme Q10, plasma membrane oxidase and growth control

Expression of early developmental genes in Dictyostelium discoideum is initiated during exponential growth by an autocrine-dependent mechanism.

Mechanism of regulation of 8-hydroxyguanine endonuclease by oxidative stress: roles of FNR, ArcA, and Fur

Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data

Regulatory mechanisms in expression of the traY-I operon of sex factor plasmid R100: involvement of traJ and traY gene products

A possible glycine radical in anaerobic ribonucleotide reductase from Escherichia coli: nucleotide sequence of the cloned nrdD gene

Escherichia coli HlyT protein, a transcriptional activator of haemolysin synthesis and secretion, is encoded by the rfaH (sfrB) locus required for expression of sex factor and lipopolysaccharide genes

Specific transcriptional requirements for positive regulation of the anaerobically inducible pfl operon by ArcA and FNR

Definition of nitrite and nitrate response elements at the anaerobically inducible Escherichia coli nirB promoter: interactions between FNR and NarL

Influence of pH on bacterial gene expression

Adaptation of Escherichia coli to redox environments by gene expression

Iron and oxygen regulation of Escherichia coli MnSOD expression: competition between the global regulators Fur and ArcA for binding to DNA

Regulation of transcription at the ndh promoter of Escherichia coli by FNR and novel factors

Magnetic-circular-dichroism studies of Escherichia coli cytochrome bo. Identification of high-spin ferric, low-spin ferric and ferryl [Fe(IV)] forms of heme o

Induction of the Escherichia coli cytochrome d by low delta mu H+ and by sodium ions

Multiprobe RNase protection assay analysis of mRNA levels for the Escherichia coli oxidative DNA glycosylase genes under conditions of oxidative stress.

Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems.

Effect of the arcA mutation on the expression of flagella genes in Escherichia coli

Agent-based modeling of oxygen-responsive transcription factors in Escherichia coli

Determining the control circuitry of redox metabolism at the genome-scale

E. coli hypoxia-inducible factor ArcA mediates lifespan extension in a lipoic acid synthase mutant by suppressing acetyl-CoA synthetase.

Regulation of bacterial conjugation in microaerobiosis by host-encoded functions ArcAB and sdhABCD.

The hydrogenases and formate dehydrogenases of Escherichia coli

Metabolic systems cost-benefit analysis for interpreting network structure and regulation

Intracellular expression of Vitreoscilla hemoglobin modifies microaerobic Escherichia coli metabolism through elevated concentration and specific activity of cytochrome o

Repression of in vitro transcription of the Escherichia coli fnr and nar X genes by FNR protein

Characterization of an oxygen-dependent inducible promoter, the Escherichia coli nar promoter, in gram-negative host strains

Genome-wide screen identifies Escherichia coli TCA-cycle-related mutants with extended chronological lifespan dependent on acetate metabolism and the hypoxia-inducible transcription factor ArcA.

Succinate dehydrogenase and fumarate reductase from Escherichia coli

Effect of the global redox sensing/regulation networks on Escherichia coli and metabolic flux distribution based on C-13 labeling experiments

Molecular analysis of dimethylsulfoxide reductase: a complex iron-sulfur molybdoenzyme of Escherichia coli.

Metabolism and function of coenzyme Q

Structural analysis of ligand stimulation of the histidine kinase NarX.

Mechanisms for redox control of gene expression

Cytochrome bd terminal oxidase

Maintenance energy requirement: what is required for stasis survival of Escherichia coli?

Diverse regulatory circuits for transfer of conjugative elements

The two isoenzymes for yeast NAD+-dependent glycerol 3-phosphate dehydrogenase encoded by GPD1 and GPD2 have distinct roles in osmoadaptation and redox regulation

Strategies for manipulation of oxygen utilization by the electron transfer chain in microbes for metabolic engineering purposes

Fixation of CO2 using the ethylmalonyl-CoA pathway in the photoheterotrophic marine bacterium Dinoroseobacter shibae

Compensations for diminished terminal oxidase activity in Escherichia coli: cytochrome bd-II-mediated respiration and glutamate metabolism.

Proteomic Delineation of the ArcA Regulon in Salmonella Typhimurium During Anaerobiosis.

Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis

Chemical and Metabolic Controls on Dihydroxyacetone Metabolism Lead to Suboptimal Growth of Escherichia coli

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