PMID: 8812068Jun 1, 1996

AFNI: software for analysis and visualization of functional magnetic resonance neuroimages

Computers and Biomedical Research, an International Journal
R W Cox

Abstract

A package of computer programs for analysis and visualization of three-dimensional human brain functional magnetic resonance imaging (FMRI) results is described. The software can color overlay neural activation maps onto higher resolution anatomical scans. Slices in each cardinal plane can be viewed simultaneously. Manual placement of markers on anatomical landmarks allows transformation of anatomical and functional scans into stereotaxic (Talairach-Tournoux) coordinates. The techniques for automatically generating transformed functional data sets from manually labeled anatomical data sets are described. Facilities are provided for several types of statistical analyses of multiple 3D functional data sets. The programs are written in ANSI C and Motif 1.2 to run on Unix workstations.

References

Apr 8, 2009·Archives of General Psychiatry·L Elliot HongElliot A Stein
Apr 7, 2010·Archives of General Psychiatry·Ian H GotlibJutta Joormann
Sep 5, 2012·Archives of General Psychiatry·Do P M TrompJack B Nitschke
Oct 8, 2008·Archives of General Psychiatry·Karina S BlairDaniel S Pine
Sep 25, 2004·Hippocampus·Jeffrey J Gold, Larry R Squire
Oct 4, 2006·Psychopharmacology·Estibaliz ArceM P Paulus
Jun 15, 2007·Psychopharmacology·Susan F TapertLawrence R Frank
Sep 24, 2010·Psychopharmacology·Matthew T SutherlandElliot A Stein
Mar 20, 2008·Experimental Brain Research·Patrick BédardJerome N Sanes
Apr 26, 2008·European Archives of Psychiatry and Clinical Neuroscience·Tomas HajekMartin Alda
Apr 23, 2009·Brain Topography·Julie Brefczynski-LewisAina Puce
Mar 25, 2011·Journal of Neuroimmune Pharmacology : the Official Journal of the Society on NeuroImmune Pharmacology·Beau M AncesHIV Neurobehavioral Research Center (HNRC) Group
May 27, 2010·Brain Imaging and Behavior·Francesca M FilbeyRobert M Cohen
Jul 9, 2010·Brain Imaging and Behavior·Joseph C WildenbergMary E Meyerand
Mar 9, 2010·Brain Research·Sunita BavaSusan F Tapert
Jul 9, 2005·Drug and Alcohol Dependence·Alecia D SchweinsburgSusan F Tapert
Oct 8, 2008·Development and Psychopathology·Ruskin H Hunt, Kathleen M Thomas
Jan 24, 2004·Journal of the International Neuropsychological Society : JINS·Bruce CrossonRichard Briggs
Jan 24, 2004·Journal of the International Neuropsychological Society : JINS·Catherine L ElsingerRaymond G Hoffmann
Aug 26, 2004·Journal of the International Neuropsychological Society : JINS·William M PerlsteinRichard Briggs
Oct 11, 2005·Journal of the International Neuropsychological Society : JINS·Alecia D SchweinsburgSusan F Tapert
Jan 26, 2006·Journal of the International Neuropsychological Society : JINS·Christina E WierengaBruce Crosson
Sep 12, 2006·Journal of the International Neuropsychological Society : JINS·John L StrickerSean P A Drummond
Oct 27, 2006·Journal of the International Neuropsychological Society : JINS·Leora R Cherney, Steven L Small
Aug 19, 2007·Journal of the International Neuropsychological Society : JINS·Andrew R MayerJose M Cañive
Aug 19, 2007·Journal of the International Neuropsychological Society : JINS·Janice L ZimbelmanStephen M Rao
Jun 26, 2008·Journal of the International Neuropsychological Society : JINS·Tim ConwayBruce Crosson
Oct 29, 2008·Journal of the International Neuropsychological Society : JINS·Brandon KeehnRalph-Axel Müller
Feb 24, 2009·Journal of the International Neuropsychological Society : JINS·Christina E WierengaBruce Crosson
May 1, 2009·Journal of the International Neuropsychological Society : JINS·Helen M GenovaJohn Deluca
Oct 24, 2009·Journal of the International Neuropsychological Society : JINS·Alessandra M PassarottiMani N Pavuluri
Sep 2, 2011·Journal of the International Neuropsychological Society : JINS·Andreana P HaleyRachel A Cooper

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