PMID: 3753796Jan 10, 1986Paper

Algorithms for the search of amino acid patterns in nucleic acid sequences

Nucleic Acids Research
H PeltolaE Ukkonen

Abstract

Some algorithms are described for the search of regions in a nucleic acid sequence that, when translated into amino acids, are homologous to a given amino acid pattern. All algorithms are modifications of the dynamic programming method for sequence comparison such that the translation of codons is taken into account. One of the algorithms has been implemented as a FORTRAN 77 program. The program operates on files that follow the format of the EMBL Nucleotide Sequence Data Library.

References

Mar 1, 1970·Journal of Molecular Biology·S B Needleman, C D Wunsch
Jan 11, 1984·Nucleic Acids Research·H PeltolaE Ukkonen

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Citations

Aug 27, 1999·Advances in Biophysics·O Gotoh
Oct 1, 1997·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Z ZhangW Miller
Jul 10, 2012·Briefings in Bioinformatics·Tulika Prakash, Todd D Taylor
Dec 24, 1997·Genomics·W R PearsonW Miller
Apr 28, 2020·Journal of Bioinformatics and Computational Biology·Mohammad-Hadi Foroughmand-AraabiBahram Goliaei

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