Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus.

DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes
Matthew N NelsonSimon R Ellwood

Abstract

We have developed a dense reference genetic map of Lupinus angustifolius (2n = 40) based on a set of 106 publicly available recombinant inbred lines derived from a cross between domesticated and wild parental lines. The map comprised 1090 loci in 20 linkage groups and three small clusters, drawing together data from several previous mapping publications plus almost 200 new markers, of which 63 were gene-based markers. A total of 171 mainly gene-based, sequence-tagged site loci served as bridging points for comparing the Lu. angustifolius genome with the genome sequence of the model legume, Lotus japonicus via BLASTn homology searching. Comparative analysis indicated that the genomes of Lu. angustifolius and Lo. japonicus are highly diverged structurally but with significant regions of conserved synteny including the region of the Lu. angustifolius genome containing the pod-shatter resistance gene, lentus. We discuss the potential of synteny analysis for identifying candidate genes for domestication traits in Lu. angustifolius and in improving our understanding of Fabaceae genome evolution.

References

Oct 5, 1990·Journal of Molecular Biology·S F AltschulD J Lipman
Nov 11, 1995·Nucleic Acids Research·P VosM Kuiper
Jul 11, 2003·Annals of Botany·Barbara NaganowskaZygmunt Kaczmarek
Oct 19, 2004·Proceedings of the National Academy of Sciences of the United States of America·Hong-Kyu ChoiDouglas R Cook
Apr 13, 2005·Plant Physiology·Nevin D YoungSatoshi Tabata
Mar 22, 2006·Proceedings of the National Academy of Sciences of the United States of America·Martin A LysakIngo Schubert
Apr 11, 2006·Genome Génome / Conseil National De Recherches Canada·Matthew N Nelson, Derek J Lydiate
Jun 23, 2006·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Matthew N NelsonWallace A Cowling
Jul 19, 2006·Cellular & Molecular Biology Letters·Andrzej KasprzakBarbara Naganowska
Nov 23, 2006·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Huyen T T PhanRichard P Oliver
May 31, 2008·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Shusei SatoSatoshi Tabata

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Citations

Aug 7, 2012·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·S Cruz-IzquierdoA M Torres
Aug 4, 2011·Journal of Biomedicine & Biotechnology·Kangfu Yu
Mar 19, 2014·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Magdalena KrocMatthew N Nelson
Dec 24, 2011·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Harsh RamanJoerg Schondelmaier
Aug 28, 2012·BMC Genomics·Lorena B Parra-GonzálezIván J Maureira-Butler
Oct 16, 2010·The Journal of Heredity·Karolina LesniewskaBarbara Naganowska
Jul 15, 2015·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Kristin FischerBrigitte Ruge-Wehling
Mar 31, 2015·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Huaan YangShancen Zhao
May 12, 2016·Chromosome Research : an International Journal on the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology·Katarzyna WyrwaBarbara Naganowska
Aug 16, 2016·Frontiers in Plant Science·Karolina SusekBogdan Wolko
Feb 16, 2017·Frontiers in Plant Science·Karen M FrickRhonda C Foley
Jul 20, 2020·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Muhammad Munir IqbalMatthew N Nelson
Oct 21, 2017·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Gaofeng ZhouHuaan Yang
Aug 15, 2019·Journal of Applied Genetics·Sandra Rychel, Michał Książkiewicz
Jun 24, 2017·PloS One·Karolina SusekBarbara Naganowska
Feb 20, 2019·International Journal of Molecular Sciences·Eleni M AbrahamDimitrios Vlachostergios
Nov 17, 2020·Frontiers in Genetics·Yee-Shan KuHon-Ming Lam
Oct 4, 2017·Plant Science : an International Journal of Experimental Plant Biology·Dorota NarożnaCezary J Mądrzak

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Methods Mentioned

BETA
GLIP
PCR
genotyping

Software Mentioned

MultiPoint
blastall
BLASTn
Primer3
GridMap
custom Perl scripts

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