An integrated high-density linkage map of soybean with RFLP, SSR, STS, and AFLP markers using A single F2 population

DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes
Zhengjun XiaKyuya Harada

Abstract

Soybean [Glycine max (L.) Merrill] is the most important leguminous crop in the world due to its high contents of high-quality protein and oil for human and animal consumption as well as for industrial uses. An accurate and saturated genetic linkage map of soybean is an essential tool for studies on modern soybean genomics. In order to update the linkage map of a F2 population derived from a cross between Misuzudaizu and Moshidou Gong 503 and to make it more informative and useful to the soybean genome research community, a total of 318 AFLP, 121 SSR, 108 RFLP, and 126 STS markers were newly developed and integrated into the framework of the previously described linkage map. The updated genetic map is composed of 509 RFLP, 318 SSR, 318 AFLP, 97 AFLP-derived STS, 29 BAC-end or EST-derived STS, 1 RAPD, and five morphological markers, covering a map distance of 3080 cM (Kosambi function) in 20 linkage groups (LGs). To our knowledge, this is presently the densest linkage map developed from a single F2 population in soybean. The average intermarker distance was reduced to 2.41 from 5.78 cM in the earlier version of the linkage map. Most SSR and RFLP markers were relatively evenly distributed among different LGs in contrast to the mo...Continue Reading

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Citations

Jan 20, 2011·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Xiaolei WuHenry T Nguyen
May 24, 2012·Proceedings of the National Academy of Sciences of the United States of America·Zhengjun XiaKyuya Harada
Jun 18, 2009·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Tae-Young HwangMasao Ishimoto
Apr 2, 2011·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Takashi SayamaMasao Ishimoto
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Methods Mentioned

BETA
PCR
genotyping

Software Mentioned

JoinMap
HEGS
Chromas
FASTA
BLAST
MAPMAKER

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