An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3

Standards in Genomic Sciences
Adam R RiversMary Ann Moran

Abstract

When the genome of Ruegeria pomeroyi DSS-3 was published in 2004, it represented the first sequence from a heterotrophic marine bacterium. Over the last ten years, the strain has become a valuable model for understanding the cycling of sulfur and carbon in the ocean. To ensure that this genome remains useful, we have updated 69 genes to incorporate functional annotations based on new experimental data, and improved the identification of 120 protein-coding regions based on proteomic and transcriptomic data. We review the progress made in understanding the biology of R. pomeroyi DSS-3 and list the changes made to the genome.

References

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Citations

Sep 30, 2015·Proteomics·Joseph A Christie-Oleza, Jean Armengaud
Jan 31, 2016·Applied and Environmental Microbiology·Yao ZhangHaiwei Luo
Nov 28, 2015·Standards in Genomic Sciences·Adam R RiversMary Ann Moran
Jun 27, 2017·Nature Microbiology·Joseph A Christie-OlezaDavid J Scanlan
Feb 6, 2020·Proceedings of the National Academy of Sciences of the United States of America·He FuMary Ann Moran

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Datasets Mentioned

BETA
CP000031.2
CP000032.1

Software Mentioned

Glimmer
TIGR Assembler

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