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Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures

Methods in Molecular Biology

Apr 26, 2013

Jacob PollierAlain Goossens

Abstract

The recent development of various deep sequencing techniques has led to the most powerful transcript profiling method available to date, RNA sequencing or RNA-Seq. Besides the identification of new genes and new splice variants of known genes, RNA-Seq allows to compare the whole transcr...read more

Mentioned in this Paper

Sequence Determinations, RNA
Jasmonate
Genome Mapping
Computer Programs and Programming
Culture Techniques
Sequencing
Oxylipins
Deep Sequencing
Organism
High-Throughput Nucleotide Sequencing
1
159
Paper Details
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Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures

Methods in Molecular Biology

Apr 26, 2013

Jacob PollierAlain Goossens

PMID: 23616006

DOI: 10.1007/978-1-62703-414-2_24

Abstract

The recent development of various deep sequencing techniques has led to the most powerful transcript profiling method available to date, RNA sequencing or RNA-Seq. Besides the identification of new genes and new splice variants of known genes, RNA-Seq allows to compare the whole transcr...read more

Mentioned in this Paper

Sequence Determinations, RNA
Jasmonate
Genome Mapping
Computer Programs and Programming
Culture Techniques
Sequencing
Oxylipins
Deep Sequencing
Organism
High-Throughput Nucleotide Sequencing
1
159

Similar Papers Found In These Feeds

Membrane Protein Extraction

This feed focuses on biochemical techniques used for isolating and purifying membrane proteins from cells. Discover the latest research on Membrane Protein Extraction here.

Related Papers

BMC Bioinformatics

Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data

BMC BioinformaticsSeptember 24, 2013
Mingzhu ZhuJianlin Cheng
Bioinformatics

RNA-Seq gene expression estimation with read mapping uncertainty

BioinformaticsDecember 22, 2009
Bo LiColin N Dewey
Paper Details
References
  • References
  • Citations16
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
  • References
  • Citations16
12
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