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Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures

Methods in Molecular Biology

Jan 1, 2013

Jacob PollierAlain Goossens

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Abstract

The recent development of various deep sequencing techniques has led to the most powerful transcript profiling method available to date, RNA sequencing or RNA-Seq. Besides the identification of new genes and new splice variants of known genes, RNA-Seq allows to compare the whole transcr...read more

Mentioned in this Paper

Oxylipins
Genome, Plant
Cyclopentenes
Organism
Plant Growth Regulators
Culture Techniques
MRNA Differential Display
Determination, Sequence Homology
RNA, Plant
Transcriptome
1
159
Paper Details
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  • Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures

    Methods in Molecular Biology

    Jan 1, 2013

    Jacob PollierAlain Goossens

    PMID: 23616006

    DOI: 10.1007/978-1-62703-414-2_24

    Abstract

    The recent development of various deep sequencing techniques has led to the most powerful transcript profiling method available to date, RNA sequencing or RNA-Seq. Besides the identification of new genes and new splice variants of known genes, RNA-Seq allows to compare the whole transcr...read more

    Mentioned in this Paper

    Oxylipins
    Genome, Plant
    Cyclopentenes
    Organism
    Plant Growth Regulators
    1
    159
    Paper Details
    References
    • References
    • Citations10

      References currently unavailable

      We're still populating references for this paper, please check back later.
    • References
    • Citations10
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