Apr 6, 2017

Application of hierarchical oligonucleotide primer extension (HOPE) to assess relative abundances of ammonia- and nitrite-oxidizing bacteria

BMC Microbiology
Giantommaso ScarasciaPei-Ying Hong

Abstract

Establishing an optimal proportion of nitrifying microbial populations, including ammonia-oxidizing bacteria (AOB), nitrite-oxidizing bacteria (NOB), complete nitrite oxidizers (comammox) and ammonia-oxidizing archaea (AOA), is important for ensuring the efficiency of nitrification in water treatment systems. Hierarchical oligonucleotide primer extension (HOPE), previously developed to rapidly quantify relative abundances of specific microbial groups of interest, was applied in this study to track the abundances of the important nitrifying bacterial populations. The method was tested against biomass obtained from a laboratory-scale biofilm-based trickling reactor, and the findings were validated against those obtained by 16S rRNA gene-based amplicon sequencing. Our findings indicated a good correlation between the relative abundance of nitrifying bacterial populations obtained using both HOPE and amplicon sequencing. HOPE showed a significant increase in the relative abundance of AOB, specifically Nitrosomonas, with increasing ammonium content and shock loading (p < 0.001). In contrast, Nitrosospira remained stable in its relative abundance against the total community throughout the operational phases. There was a corresponding...Continue Reading

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  • Citations2

Citations

Mentioned in this Paper

Study
Nitrosospira
Ataxia, EARLY-ONSET, With Oculomotor Apraxia AND Hypoalbuminemia
Genus Nitrospira
Fermentors
Nucleic Acid Sequencing
Shock
(4R,7R*/S*)-2, 4-dimethyl-4-(1'-acetyl-3'-oxobutyl)-2- butenolide
Archaea
Laboratory

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