Asparagine-mediated self-association of a model transmembrane helix

Nature Structural Biology
C ChomaWilliam F DeGrado

Abstract

In membrane proteins, the extent to which polarity, hydrogen bonding, and van der Waals packing interactions of the buried, internal residues direct protein folding and association of transmembrane segments is poorly understood. The energetics associated with these various interactions should differ substantially between membrane versus water-soluble proteins. To help evaluate these energetics, we have altered a water-soluble, two-stranded coiled-coil peptide to render its sequence soluble in membranes. The membrane-soluble peptide associates in a monomer-dimer-trimer equilibrium, in which the trimer predominates at the highest peptide/detergent ratios. The oligomers are stabilized by a buried Asn side chain. Mutation of this Asn to Val essentially eliminates oligomerization of the membrane-soluble peptide. Thus, within a membrane-like environment, interactions involving a polar Asn side chain provide a strong thermodynamic driving force for membrane helix association.

Citations

Mar 3, 2004·Biopolymers·Roman A MelnykCharles M Deber
Feb 22, 2012·Die Naturwissenschaften·Robert P Bywater
Aug 31, 2002·Biophysical Journal·H GratkowskiJames D Lear
Jul 17, 2009·Journal of the American Chemical Society·Nathan H JohJames U Bowie
Jul 17, 2012·Nature Chemical Biology·Rosanna P Baker, Sinisa Urban
Dec 22, 2009·Nature Structural & Molecular Biology·Svenja HaegerGünther Schmalzing
Jan 16, 2007·Nature Structural & Molecular Biology·Guillaume DrinBruno Antonny
Jul 17, 2007·Nature Structural & Molecular Biology·Teresa M BuckWilliam R Skach
Aug 25, 2010·Physical Chemistry Chemical Physics : PCCP·Durba Sengupta, Siewert J Marrink
Oct 8, 2013·Physical Chemistry Chemical Physics : PCCP·Xavier PrasannaDurba Sengupta
Apr 21, 2010·Proceedings of the National Academy of Sciences of the United States of America·Shalom D GoldbergWilliam F DeGrado
Aug 1, 2012·Proceedings of the National Academy of Sciences of the United States of America·Kuang-Yui Michael ChenPatrick Barth
Apr 17, 2009·The Journal of Biological Chemistry·Raphaëlle Pardossi-PiquardPaul E Fraser
Jun 27, 2009·The Journal of Biological Chemistry·Hsuan-Wen HwangLee-Young Chau
Feb 16, 2005·Astrobiology·Andrew PohorilleMichael A Wilson
Oct 15, 2011·Molecular Biology of the Cell·Anna E PatrickPhilip J Thomas
Apr 23, 2013·Applied and Environmental Microbiology·Shaorong ChenLeif Smith
Jun 25, 2008·Annual Review of Biophysics·S H White, G von Heijne
Jun 30, 2005·BMC Structural Biology·Oleg V KovalenkoMartin E Hemler
Jul 14, 2009·PLoS Pathogens·Konstantin PervushinJaume Torres
Dec 6, 2003·Proceedings of the National Academy of Sciences of the United States of America·Lidia CristianWilliam F DeGrado
Aug 2, 2001·Proceedings of the National Academy of Sciences of the United States of America·A SenesDonald M Engelman
Jan 27, 2005·Proceedings of the National Academy of Sciences of the United States of America·Wei LiJoel S Bennett
Oct 16, 2004·Proceedings of the National Academy of Sciences of the United States of America·Başar Bilgiçer, Krishna Kumar
Feb 28, 2001·Proceedings of the National Academy of Sciences of the United States of America·F X ZhouDonald M Engelman
Jul 5, 2007·Proceedings of the National Academy of Sciences of the United States of America·Jennifer B PtacekDaniel DiMaio
Oct 19, 2001·Proceedings of the National Academy of Sciences of the United States of America·R LiWilliam F DeGrado
Feb 7, 2001·Proceedings of the National Academy of Sciences of the United States of America·H GratkowskiWilliam F DeGrado
Jul 18, 2014·Proceedings of the National Academy of Sciences of the United States of America·Bobby L KimPeter G Wolynes
Apr 1, 2010·Science Signaling·Nevin A Lambert
Jan 27, 2010·Cellular and Molecular Life Sciences : CMLS·Sebastian FiedlerSandro Keller
Feb 7, 2012·Journal of Biological Inorganic Chemistry : JBIC : a Publication of the Society of Biological Inorganic Chemistry·Sandip ShindeGiovanna Ghirlanda
Jul 23, 2015·Proceedings of the National Academy of Sciences of the United States of America·James A StapletonVikas Nanda
Feb 20, 2016·Biochemistry·Christian Lothar RiedDieter Langosch
Feb 3, 2009·Proceedings of the National Academy of Sciences of the United States of America·Arianna RathCharles M Deber
Jun 8, 2012·The Biochemical Journal·Alexandros PoulopoulosNils Brose
Dec 7, 2013·The Biochemical Journal·Carlos A Martínez-GarayM Carmen Bañó
Aug 31, 2000·Annual Review of Biochemistry·J L Popot, Donald M Engelman
Jun 1, 2011·Biomolecular Concepts·Zoltán Gáspári, László Nyitray
Oct 29, 2014·Proceedings of the National Academy of Sciences of the United States of America·Wei DengRenhao Li
Nov 11, 2005·Journal of Molecular Biology·Anja RidderDieter Langosch
Jan 24, 2006·Journal of Molecular Biology·Abigail E Kroch, Karen G Fleming
May 12, 2004·Journal of Molecular Biology·Aaron K ChamberlainJames U Bowie
Jul 28, 2004·Structure·Kay-Eberhard Gottschalk, Horst Kessler
Jul 10, 2010·Journal of Molecular Biology·Hua ZhuJoel S Bennett
Dec 28, 2016·ACS Chemical Biology·Jordan M FletcherDerek N Woolfson
Jun 8, 2017·Biophysical Journal·Omar B Sanchez-ReyesSteven O Smith
Dec 10, 2002·Current Opinion in Chemical Biology·Jie Liang
Oct 18, 2002·Advanced Drug Delivery Reviews·Y Bruce Yu
Mar 27, 2004·Biophysical Chemistry·Karen G FlemingAnn Marie Stanley
Jun 16, 2005·Biochimica Et Biophysica Acta·Michael Cascio
Aug 18, 2004·Current Opinion in Structural Biology·Alessandro SenesWilliam F DeGrado
Sep 3, 2009·Journal of the American Chemical Society·Yao ZhangWilliam F DeGrado
May 9, 2009·Biochimica Et Biophysica Acta·Jan BenediktViktorie Vlachova
Dec 17, 2005·Archives of Biochemistry and Biophysics·Supaporn LikitvivatanavongChanan Angsuthanasombat
Jul 24, 2003·Protein Science : a Publication of the Protein Society·Lidia CristianWilliam F DeGrado
Dec 2, 2005·Nature·James U Bowie
Nov 20, 2016·The Journal of Biological Chemistry·Martin PomsOliver Zerbe
Jan 27, 2004·The Journal of Biological Chemistry·Lee G KwaPaula Braun
Sep 12, 2002·The Journal of Biological Chemistry·Petra ScholzeHarald H Sitte
Jan 23, 2003·Biopolymers·Anthony W PartridgeCharles M Deber
May 23, 2002·FEBS Letters·Simon SharpeChris W M Grant
Apr 12, 2001·FEBS Letters·I Arechaga, P C Jones
Apr 19, 2011·Chembiochem : a European Journal of Chemical Biology·Christopher J PaceJianmin Gao
Jun 24, 2010·Protein Science : a Publication of the Protein Society·Kuei-Min ChungXin Chen
Mar 19, 2005·Human Mutation·Jérôme ClainPascale Fanen
Jun 10, 2014·Journal of Peptide Science : an Official Publication of the European Peptide Society·Patricia Kemayo KoumkouaBurkhard Bechinger
Jun 21, 2014·Protein Science : a Publication of the Protein Society·Irina D PogozhevaAndrei L Lomize
May 28, 2015·Journal of Bacteriology·Revathi GovindRebekah Nichols
Oct 23, 2018·Omics : a Journal of Integrative Biology·Avijit PodderLatha Narayanan
Jun 17, 2009·Protein Science : a Publication of the Protein Society·Dieter Langosch, Isaiah T Arkin
Dec 30, 2006·Journal of Computational Chemistry·Jinhyuk Lee, Wonpil Im
Mar 29, 2008·Protein Science : a Publication of the Protein Society·Krupakar ParthasarathyJaume Torres
Jul 28, 2009·Journal of Thrombosis and Haemostasis : JTH·Joel S BennettP C Billings
Nov 9, 2010·Proteomics·Remigiusz WorchThomas Weidemann
Dec 24, 2005·Proteins·Vladimir Yarov-YarovoyDavid Baker
Jan 6, 2006·Proteins·Madhusoodanan MottamalThemis Lazaridis
Mar 15, 2006·Angewandte Chemie·Natascha NaarmannClaudia Steinem
Feb 18, 2006·The Journal of Biological Chemistry·Adela Garcia-MartinPaula Braun
Sep 27, 2006·The Journal of Biological Chemistry·Wiebke DuckwitzGünther Schmalzing
May 3, 2019·Nature Communications·Albert EscobedoXavier Salvatella
Jun 21, 2017·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Nathan H JohWilliam F DeGrado
May 16, 2014·Chembiochem : a European Journal of Chemical Biology·Mukesh Mahajan, Surajit Bhattacharjya
Jan 12, 2007·Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire·Rachel M JohnsonCharles M Deber
Feb 12, 2020·Quarterly Reviews of Biophysics·Ivan V Korendovych, William F DeGrado
Dec 28, 2019·The Journal of Biological Chemistry·Justin M Westerfield, Francisco N Barrera
Dec 19, 2001·The Journal of Biological Chemistry·Alex G Therien, Charles M Deber
Oct 5, 2001·The Journal of Biological Chemistry·R Gurezka, Dieter Langosch
Oct 9, 2003·The Journal of Biological Chemistry·Endah S SulistijoKevin R Mackenzie
Feb 10, 2004·The Journal of Biological Chemistry·Roman A MelnykCharles M Deber
Mar 31, 2004·The Journal of Biological Chemistry·R Scott HoulistonJames H Davis
Oct 28, 2011·Protein Science : a Publication of the Protein Society·Daniel HsiehVikas Nanda
Aug 21, 2019·Scientific Reports·Mame Ndew MbayeMarianne Rooman
May 27, 2015·Biopolymers·Joel S Bennett
Jul 4, 2001·The Journal of Biological Chemistry·S H WhiteK Hristova
Jun 27, 2019·Nature Structural & Molecular Biology·Martin D GelenterMei Hong
Aug 21, 2020·Nature·Patrick J Chitwood, Ramanujan S Hegde
Dec 18, 2001·The Journal of Biological Chemistry·Soledad FunesDiego González-Halphen
Apr 9, 2016·The Journal of Biological Chemistry·Karen P FongJoel S Bennett
Dec 26, 2001·The Journal of Immunology : Official Journal of the American Association of Immunologists·Lisa M Spain, Pinghu Liu
May 10, 2007·The Journal of Biological Chemistry·Neta Sal-ManYechiel Shai
Apr 28, 2010·Cell Adhesion & Migration·Eduard V BocharovAlexander S Arseniev
Sep 11, 2018·Protein Science : a Publication of the Protein Society·Curran OiLynne Regan
Nov 13, 2020·Nature Structural & Molecular Biology·Venkata S MandalaMei Hong
Oct 7, 2000·Journal of Molecular Biology·C N Chin, G von Heijne
Apr 3, 2012·Physical Review Letters·Soohyung ParkWonpil Im
Dec 14, 2011·Biochimica Et Biophysica Acta·Avner FinkYechiel Shai
Aug 12, 2014·Archives of Biochemistry and Biophysics·Heedeok Hong
Jul 14, 2019·Journal of Molecular Biology·Ross S FedermanDaniel DiMaio
May 9, 2012·Journal of Molecular Biology·Christian Lothar RiedDieter Langosch
Jan 21, 2010·The Journal of Physical Chemistry. B·Yoshiaki YanoKatsumi Matsuzaki
Apr 22, 2008·Journal of the American Chemical Society·Jinhyuk Lee, Wonpil Im
May 7, 2009·Biochemistry·Endah S Sulistijo, Kevin R Mackenzie
May 21, 2010·Journal of the American Chemical Society·Philipp Erik SchneggenburgerUlf Diederichsen
Jan 5, 2002·Journal of Molecular Biology·Roman A MelnykCharles M Deber
Mar 10, 2001·Journal of Molecular Biology·R P RiekR M Graham
Feb 28, 2002·Journal of Molecular Biology·Jessica P DawsonDonald M Engelman
Jan 5, 2002·Journal of Molecular Graphics & Modelling·C T ChomaH J Berendsen
Jun 28, 2002·Journal of Chemical Information and Computer Sciences·Davor JuretićDamir Zucić
Jun 7, 2008·ACS Chemical Biology·Peter F SlivkaHang Yin
Oct 17, 2002·Journal of Molecular Biology·Karen G Fleming
Mar 13, 2009·Biochemistry·Arianna RathCharles M Deber
Mar 21, 2003·Biophysical Chemistry·Raphael ZidovetzkiIsrael Pecht
Jul 24, 2003·Journal of Molecular Biology·Jessica P DawsonDonald M Engelman
Nov 13, 2003·European Journal of Pharmacology·Harald H Sitte, Michael Freissmuth

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