PMID: 11909113Mar 23, 2002Paper

Asymmetric exclusion process and extremal statistics of random sequences

Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
R Bundschuh

Abstract

A mapping is established between sequence alignment, one of the most commonly used tools of computational biology, at a certain choice of scoring parameters and the asymmetric exclusion process, one of the few exactly solvable models of nonequilibrium physics. The statistical significance of sequence alignments is characterized through studying the total hopping current of the discrete time and space version of the asymmetric exclusion process.

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Citations

Feb 5, 2005·Bulletin of Mathematical Biology·Maik KschischoYi-Kuo Yu
Mar 30, 2010·Proceedings of the National Academy of Sciences of the United States of America·Sylvie Corteel, Lauren K Williams
Apr 7, 2006·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Nicholas Chia, Ralf Bundschuh
Oct 30, 2008·BMC Systems Biology·Michal KolárJohannes Berg
May 21, 2005·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Jordan Brankov, Nadezhda Bunzarova
Feb 21, 2006·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Mihaela E SardiuYi-Kuo Yu
Nov 9, 2011·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Sergey SheetlinJohn L Spouge
May 16, 2014·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Shlomi ReuveniUri Yechiali
Jun 13, 2015·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·R B Stinchcombe, S L A de Queiroz
Nov 28, 2019·Physical Review. E·Ofek Lauber Bonomo, Shlomi Reuveni
May 17, 2017·Physical Review. E·S L A de Queiroz, R B Stinchcombe
Sep 11, 2019·Physical Review. E·S L A de Queiroz, R B Stinchcombe
Dec 31, 2005·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Nicholas Chia, Ralf Bundschuh
Jul 30, 2011·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·R B Stinchcombe, S L A de Queiroz
Jul 30, 2011·Physical Review Letters·Jan de Gier, Fabian H L Essler
Sep 28, 2004·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Nicholas Chia, Ralf Bundschuh
Dec 21, 2011·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Shlomi ReuveniUri Yechiali
Nov 16, 2013·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·R B StinchcombeBelita Koiller

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