Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem.

Journal of Virology
Divya VenkateshNicola S Lewis

Abstract

Wild ducks and gulls are the major reservoirs for avian influenza A viruses (AIVs). The mechanisms that drive AIV evolution are complex at sites where various duck and gull species from multiple flyways breed, winter, or stage. The Republic of Georgia is located at the intersection of three migratory flyways: the Central Asian flyway, the East Africa/West Asia flyway, and the Black Sea/Mediterranean flyway. For six complete study years (2010 to 2016), we collected AIV samples from various duck and gull species that breed, migrate, and overwinter in Georgia. We found a substantial subtype diversity of viruses that varied in prevalence from year to year. Low-pathogenic AIV (LPAIV) subtypes included H1N1, H2N3, H2N5, H2N7, H3N8, H4N2, H6N2, H7N3, H7N7, H9N1, H9N3, H10N4, H10N7, H11N1, H13N2, H13N6, H13N8, and H16N3, and two highly pathogenic AIVs (HPAIVs) belonging to clade 2.3.4.4, H5N5 and H5N8, were found. Whole-genome phylogenetic trees showed significant host species lineage restriction for nearly all gene segments and significant differences in observed reassortment rates, as defined by quantification of phylogenetic incongruence, and in nucleotide sequence diversity for LPAIVs among different host species. Hemagglutinin cla...Continue Reading

References

Dec 15, 1979·FEBS Letters·J McCauleyM D Waterfield
Mar 1, 1992·Microbiological Reviews·R G WebsterY Kawaoka
Apr 22, 2006·Science·Björn OlsenRon A M Fouchier
Aug 23, 2006·Virus Genes·Hong-Chao MaZhi-Liang Wang
Nov 28, 2006·Vaccine·Dennis J Alexander
Oct 9, 2007·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Joe ParkerOliver G Pybus
Jan 9, 2009·Proceedings. Biological Sciences·Neus Latorre-MargalefJonas Waldenström
Nov 3, 2009·Vector Borne and Zoonotic Diseases·Gunnar GunnarssonBjörn Olsen
Jan 21, 2012·Influenza and Other Respiratory Viruses·R Burke SquiresRichard H Scheuermann
Feb 24, 2012·Systematic Biology·Fredrik RonquistJohn P Huelsenbeck
Mar 1, 2012·Molecular Biology and Evolution·Alexei J DrummondAndrew Rambaut
Apr 25, 2012·Methods in Molecular Biology·Bin Zhou, David E Wentworth
Sep 21, 2012·The Journal of General Virology·Martha I NelsonEdward C Holmes
Oct 13, 2012·Bioinformatics·Limin FuWeizhong Li
Jan 19, 2013·Molecular Biology and Evolution·Kazutaka Katoh, Daron M Standley
Mar 22, 2013·PloS One·Nicola S LewisRon A M Fouchier
Aug 8, 2013·Viruses·LeAnn L LindsayWalter M Boyce
Jan 25, 2014·BMC Evolutionary Biology·Lu LuAndrew J Leigh Brown
Feb 28, 2014·Proceedings. Biological Sciences·Neus Latorre-MargalefJonas Waldenström
Apr 18, 2014·Molecular Biology and Evolution·Bastian PfeiferMartin J Lercher
Nov 6, 2014·Molecular Biology and Evolution·Lam-Tung NguyenBui Quang Minh
Nov 13, 2014·PloS One·David F Burke, Derek J Smith
Nov 13, 2014·PloS One·Josanne H VerhagenRon A M Fouchier
Feb 7, 2015·Science·Josanne H VerhagenRon A M Fouchier
Mar 22, 2016·Royal Society Open Science·Daniel BengtssonJonas Waldenström
Mar 24, 2016·Molecular Biology and Evolution·Sudhir KumarKoichiro Tamura
Jun 22, 2016·Ecology Letters·Nichola J HillJonathan A Runstadler
Jun 29, 2016·ELife·Ignacio MenaAdolfo García-Sastre
May 10, 2017·Nature Methods·Subha KalyaanamoorthyLars S Jermiin
May 27, 2017·BMC Evolutionary Biology·Mathieu FourmentEdward C Holmes
Sep 2, 2017·Journal of Veterinary Science·Dong-Hun LeeDavid E Swayne

❮ Previous
Next ❯

Citations

Dec 24, 2018·Transboundary and Emerging Diseases·Zhijun YuYongkun Zhao
Apr 19, 2020·Emerging Infectious Diseases·Rafael Dos Santos BezerraSvetoslav Nanev Slavov
Sep 24, 2020·Transboundary and Emerging Diseases·Jacqueline KingAnne Pohlmann
Sep 5, 2020·BMC Infectious Diseases·Jacqueline KingAnne Pohlmann
Jul 30, 2019·Interdisciplinary Perspectives on Infectious Diseases·Elena A ProkopyevaKirill A Sharshov
Oct 11, 2020·Vaccines·Nongluk Sriwilaijaroen, Yasuo Suzuki
Dec 2, 2020·The Science of the Total Environment·Ghulam NabiDongming Li
Nov 25, 2020·Vaccines·Nathaniel Nyakaat NinyioAbdul Razak Mariatulqabtiah
Jul 13, 2021·Current Research in Virological Science·Jayashree S NandiBajrang Raj Mathur
Mar 10, 2021·The Journal of Infectious Diseases·Dillon S McBrideAndrew S Bowman
Dec 28, 2021·Vector Borne and Zoonotic Diseases·Maryna SapachovaEric Bortz

❮ Previous
Next ❯

Methods Mentioned

BETA
reverse transcription-PCR

Software Mentioned

TREE
BEAST
IQ
est
Tempest
cd
TreeAnnotator
R
MAFFT
PACT

Related Concepts

Related Feeds

Cell Migration

Cell migration is involved in a variety of physiological and pathological processes such as embryonic development, cancer metastasis, blood vessel formation and remoulding, tissue regeneration, immune surveillance and inflammation. Here is the latest research.