Bacterial, plant, and fungal carbohydrate structure databases: daily usage

Methods in Molecular Biology
Philip Toukach, K S Egorova

Abstract

Natural carbohydrates play important roles in living systems and therefore are used as diagnostic and therapeutic targets. The main goal of glycomics is systematization of carbohydrates and elucidation of their role in human health and disease. The amount of information on natural carbohydrates accumulates rapidly, but scientists still lack databases and computer-assisted tools needed for orientation in the glycomic information space. Therefore, freely available, regularly updated, and cross-linked databases are demanded. Bacterial Carbohydrate Structure Database (Bacterial CSDB) was developed for provision of structural, bibliographic, taxonomic, NMR spectroscopic, and other related information on bacterial and archaeal carbohydrate structures. Its main features are (1) coverage above 90%, (2) high data consistence (above 90% of error-free records), and (3) presence of manually verified bibliographic, NMR spectroscopic, and taxonomic annotations. Recently, CSDB has been expanded to cover carbohydrates of plant and fungal origin. The achievement of full coverage in the plant and fungal domains is expected in the future. CSDB is freely available on the Internet as a web service at http://csdb.glycoscience.ru. This chapter aims a...Continue Reading

Citations

May 23, 2018·Angewandte Chemie·Ksenia S Egorova, Philip V Toukach
Sep 5, 2015·Database : the Journal of Biological Databases and Curation·K S EgorovaPh V Toukach
Oct 9, 2019·International Journal of Molecular Sciences·Fiona F HagerChristina Schäffer
Aug 20, 2015·Nucleic Acids Research·Philip V Toukach, Ksenia S Egorova
Jul 12, 2019·Frontiers in Microbiology·Andrei V GannesenMarc G J Feuilloley
Sep 18, 2020·International Journal of Molecular Sciences·Xing LiXia Zou
Dec 4, 2019·Journal of Chemical Information and Modeling·Philip V Toukach, Ksenia S Egorova

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