BarleyExpress: a web-based submission tool for enriched microarray database annotations

Bioinformatics
Xiaoyun TangJulie A Dickerson

Abstract

BarleyExpress is a web-based microarray experiment data submission tool for BarleyBase, a public data resource of Affymetrix GeneChip data for plants. BarleyExpress uses the Plant Ontology vocabularies and enhances the MIAME guidelines to standardize the annotation of microarray gene expression experiments. In addition, BarleyExpress provides explicit support for factorial experiment design and template loading methods to ease the submission process for large experiments. http://barleybase.org BarleyExpress Users Manual.

References

Dec 26, 2001·Nucleic Acids Research·Doreen WareLincoln Stein
Dec 26, 2001·Nucleic Acids Research·Ron EdgarAlex E Lash
Jan 10, 2003·Nucleic Acids Research·Alvis BrazmaSusanna-Assunta Sansone
Jan 10, 2003·Nucleic Acids Research·Jeremy GollubGavin Sherlock
Jan 10, 2003·Nucleic Acids Research·David E MatthewsOlin D Anderson
Dec 19, 2003·Nucleic Acids Research·Qunfeng DongVolker Brendel
Feb 13, 2004·Bioinformatics·Laurent GautierRafael A Irizarry
Mar 17, 2004·Plant Physiology·Timothy J CloseRoger P Wise
Jul 17, 2008·Comparative and Functional Genomics·UNKNOWN Plant Ontology Consortium

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Citations

Nov 16, 2011·Nucleic Acids Research·Sudhansu DashJulie A Dickerson
May 8, 2007·Annual Review of Phytopathology·Roger P WiseSteven A Whitham
Jul 11, 2006·Comparative Biochemistry and Physiology. Toxicology & Pharmacology : CBP·Zhenlin JuRonald B Walter
Apr 11, 2006·Journal of Proteome Research·Akihiko KameyamaHisashi Narimatsu

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