Bhargavaea changchunensis sp. nov. isolated from soil in China

Archives of Microbiology
Feng-Hua TianChang-Tian Li

Abstract

A Gram-staining-positive, aerobic, rod-shaped (201802YP6T) bacteria was isolated from soil, Northeast of China. Growth occurred at 10-40 °C (optimum 25-30 °C), at pH 6.0-8.0 (optimum 7.0) and at 0-2% NaCl. Based on 16S rRNA gene sequence analysis, the nearest phylogenetic neighbors of strain 201802YP6T were identified as Bhargavaea cecembensis DSE10T (99.52%), Bhargavaea beijingensis ge10T (99.45%), Bhargavaea indica KJW98T (99.45%), Bhargavaea ullalensis ZMA19T (98.81%), and Bhargavaea ginsengi ge14T (98.76%). Levels of similarity among strain 201802YP6T and other Bhargavaea species were lower than 98.76%. GyrB amino acid sequence-based analysis supported the phylogenetic position and also distinguished strain 201802YP6T from the other species of the genus Bhargavaea. DNA-DNA hybridization values between strain 201802YP6T and B. cecembensis, B. beijingensis, B. indica, B. ullalensis, B. ginsengi were 43.5%, 43%, 32.5%, 30.5% and 20.4%, respectively. The DNA G + C content of strain 201802YP6T was 51.23 mol%. The average nucleotide identity (ANI) of the draft genome was 87.04% to B. cecembensis DSE10T. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, glycolipids, phosphatidylethanolamine, and phosphatidy...Continue Reading

References

Jun 1, 1977·Journal of General Microbiology·M D CollinsD E Minnikin
Jan 1, 1991·Journal of Bacteriology·W G WeisburgD J Lane
Oct 1, 1982·Applied and Environmental Microbiology·J D Buck
Sep 12, 2007·Bioinformatics·M A LarkinD G Higgins
Feb 12, 2008·BMC Genomics·Ramy K AzizOlga Zagnitko
Mar 3, 2009·Genome Research·Jared T SimpsonInanç Birol
Mar 31, 2009·International Journal of Systematic and Evolutionary Microbiology·Fubin QiuWei Song
Jul 2, 2009·International Journal of Systematic and Evolutionary Microbiology·N A LoganA Ventosa
Jul 25, 2009·International Journal of Systematic and Evolutionary Microbiology·R ManoramaS Shivaji
Oct 27, 2009·Proceedings of the National Academy of Sciences of the United States of America·Michael Richter, Ramon Rosselló-Móra
Dec 18, 2012·International Journal of Systematic and Evolutionary Microbiology·Stefanie P GlaeserPeter Kämpfer
Mar 5, 2013·The Journal of Microbiology·Pankaj VermaYogesh Shreepad Shouche
Oct 18, 2013·Molecular Biology and Evolution·Koichiro TamuraSudhir Kumar
Feb 20, 2016·Archives of Microbiology·Zheng-Fei YanTae-Hoo Yi
Aug 16, 2016·International Journal of Systematic and Evolutionary Microbiology·Zheng-Fei YanTae-Hoo Yi
Feb 17, 2017·Antonie van Leeuwenhoek·Seok-Hwan YoonJongsik Chun
Jul 1, 1985·Evolution; International Journal of Organic Evolution·Joseph Felsenstein

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Methods Mentioned

BETA
PCR

Software Mentioned

RAST
MEGA
BioEdit
OrthoANI
OrthoANIu
EzTaxon
RASTtk
CLUSTAL

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