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BIGrat: a repeat resolver for pyrosequencing-based re-sequencing with Newbler

BMC Research Notes

Oct 17, 2012

Tongwu ZhangJun Yu

Abstract

As more and more reference genome sequences are assembled, it becomes practical to assemble individual genomes from large amount of raw read data based on a reference sequence. However, most available assembly tools are designed for de-novo genome assembly. There is one commercial tool ...read more

Mentioned in this Paper

Rice (Dietary)
Genome
Genome Assembly Sequence
Cell Nucleus
Chloroplasts
Computer Programs and Programming
Genomics
Sequencing
Mitochondria
Massively-Parallel Sequencing
1
7
Paper Details
References
  • References8
  • Citations3
1
  • References8
  • Citations3
1

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BIGrat: a repeat resolver for pyrosequencing-based re-sequencing with Newbler

BMC Research Notes

Oct 17, 2012

Tongwu ZhangJun Yu

PMID: 23069129

DOI: 10.1186/1756-0500-5-567

Abstract

As more and more reference genome sequences are assembled, it becomes practical to assemble individual genomes from large amount of raw read data based on a reference sequence. However, most available assembly tools are designed for de-novo genome assembly. There is one commercial tool ...read more

Mentioned in this Paper

Rice (Dietary)
Genome
Genome Assembly Sequence
Cell Nucleus
Chloroplasts
Computer Programs and Programming
Genomics
Sequencing
Mitochondria
Massively-Parallel Sequencing
1
7

Similar Papers Found In These Feeds

Structural Biology: Biophysics

Structural Biology: Biophysics describes the study of structural biology using various biophysical techiniques such as imaging, computational modeling, etc. Discover the latest research on structrual biology here.

Acinetobacter Infections

Acinetobacter infections have become common in hospitalized patients, especially in the intensive care unit setting and are difficult to treat due to their propensity to develop antimicrobial drug resistance. Discover the latest research on Acinetobacter Infections here.

Related Papers

Bioinformatics

VAGUE: a graphical user interface for the Velvet assembler

BioinformaticsNovember 20, 2012
David R Powell, Torsten Seemann
Paper Details
References
  • References8
  • Citations3
1
  • References8
  • Citations3
1
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