BioTIME: A database of biodiversity time series for the Anthropocene.

Global Ecology and Biogeography : a Journal of Macroecology
Maria DornelasThomas Hickler

Abstract

The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2). BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large v...Continue Reading

References

Aug 1, 1991·Chemical & Pharmaceutical Bulletin·C B CuiJ H Park
Sep 2, 1998·Annals of Allergy, Asthma & Immunology : Official Publication of the American College of Allergy, Asthma, & Immunology·V GutiérrezE González
Apr 29, 2000·Journal of Natural Products·M SalmounR W Van Soest
Jun 1, 2000·Toxicology and Applied Pharmacology·R A CorleyD A Morgott
Jul 27, 2004·Science·Henry A Ruhl, Kenneth L Smith
Sep 18, 2004·Bioelectromagnetics·R Bochert, M L Zettler
Mar 17, 2005·Frontiers in Bioscience : a Journal and Virtual Library·Lei LiPandjassarame Kangueane
Apr 21, 2006·Ecology Letters·Barry W BrookCorey J A Bradshaw
Jun 10, 2006·Science·Richard ConditTommaso Zillio
Oct 31, 2006·Ecological Applications : a Publication of the Ecological Society of America·Maite LouzaoDaniel Oro
Jul 14, 2007·The EMBO Journal·Irina PanteleevaAnne-Laurence Boutillier
Dec 2, 2008·Conservation Biology : the Journal of the Society for Conservation Biology·Ben CollenJonathan E M Baillie
May 21, 2009·Ecology Letters·Esben Moland OlsenNils Chr Stenseth
Jul 21, 2009·European Journal of Clinical Investigation·Y-S TsengL-L Chang
Aug 13, 2009·The Journal of Antimicrobial Chemotherapy·Maria de Lourdes ShikamaJuan Carlos Palomino
Sep 9, 2010·Proceedings of the National Academy of Sciences of the United States of America·Henry A Ruhl, Nancy B Rybicki
Jan 20, 2011·Proceedings of the National Academy of Sciences of the United States of America·Lauren A RogersNils Chr Stenseth
Apr 23, 2011·AJR. American Journal of Roentgenology·Sue C KasteMichael D Neel
Aug 1, 2008·Animal : an International Journal of Animal Bioscience·M D RoyalN C Friggens
Apr 13, 2012·PloS One·Magdalena Blazewicz-PaszkowyczGary Anderson
Jun 19, 2012·ZooKeys·Kwang-Tsao ShaoTun-Yuan Cheng
Sep 7, 2012·PloS One·Chao-Yang KuoChaolun Allen Chen
Jan 19, 2013·Science·H M PereiraM Wegmann
Oct 30, 2013·Proceedings of the National Academy of Sciences of the United States of America·Mark VellendSonja Wipf
Feb 18, 2014·Trends in Ecology & Evolution·F B Vincent Florens
Apr 18, 2014·Nature·Chase D MendenhallGretchen C Daily
Apr 20, 2014·Science·Maria DornelasAnne E Magurran
Sep 24, 2014·Nature Communications·Maya GhoussainiUNKNOWN Australian Ovarian Cancer Management Group
Dec 3, 2014·Trends in Ecology & Evolution·David J Hodgson, David J Hosken
Dec 31, 2014·Proceedings of the National Academy of Sciences of the United States of America·Sarah C ElmendorfMarilyn Walker
Apr 4, 2015·Nature·Tim NewboldAndy Purvis
Jan 1, 2014·Scientific Data·Graham J Edgar, Rick D Stuart-Smith
May 21, 2015·PloS One·Robert A Davis, Tim S Doherty
Jul 4, 2015·Ecology and Evolution·Robert D HollisterJessica L Gregory
Sep 25, 2015·Nature Communications·Anne E MagurranBrian McGill

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Citations

Jan 30, 2019·PLoS Biology·Glenda M YenniS K Morgan Ernest
Mar 16, 2019·Ecology Letters·Maria DornelasBrian J McGill
Jun 21, 2019·Global Change Biology·Mattia FalaschiGentile Francesco Ficetola
Oct 19, 2019·Science·Britas Klemens Eriksson, Helmut Hillebrand
Oct 19, 2019·Science·Shane A BlowesMaria Dornelas
Jun 18, 2020·Proceedings. Biological Sciences·Daijiang LiBenjamin Baiser
Apr 9, 2020·Frontiers in Psychology·Mi Jeong KimHan Jong Jun
Sep 16, 2020·Nature Ecology & Evolution·Tim NewboldJessica J Williams
Sep 23, 2020·Nature Communications·Simon ThornAlexandro B Leverkus
Sep 28, 2018·Nature·Anne D BjorkmanEvan Weiher
Jun 3, 2020·Scientific Data·María V Jiménez-FrancoJosé F Calvo
May 6, 2020·Nature Ecology & Evolution·Lise Comte, Jonathan Lenoir
Jul 23, 2019·Ecology and Evolution·Dylan CravenChristian Wirth
Aug 19, 2020·Conservation Biology : the Journal of the Society for Conservation Biology·Andrea MentgesJonathan M Chase
Sep 4, 2020·Proceedings of the National Academy of Sciences of the United States of America·Jonathan Lenoir
Jun 20, 2020·Science·Gergana N DaskalovaMaria Dornelas
May 6, 2020·Nature Ecology & Evolution·Laura H AntãoAafke M Schipper
Nov 3, 2020·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Helmut HillebrandHeather M Leslie
Nov 3, 2020·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Gavin M RishworthHelmut Hillebrand
Nov 11, 2020·American Journal of Primatology·Stefanie HeinickeHjalmar S Kühl
Nov 8, 2020·Global Change Biology·Murray S A ThompsonMichaela Schratzberger
Jan 13, 2021·Proceedings of the National Academy of Sciences of the United States of America·Toke T HøyeJenni Raitoharju
Mar 30, 2020·Current Biology : CB·Reuben A HastingsMartin J Genner
Nov 21, 2020·Ecology·Vicente J OntiverosDavid Alonso
Jan 24, 2021·The New Phytologist·Pengjuan ZuPhilip C Stevenson
Apr 17, 2020·Zoology : Analysis of Complex Systems, ZACS·Maite LouzaoRafael González-Quirós
May 20, 2021·PLoS Biology·Nicolas LoiseauDavid Mouillot
Oct 21, 2021·Global Change Biology·Nicholas J GotelliAnne E Magurran
Oct 30, 2021·Ecology·Tad A Dallas, Andrew M Kramer
Jan 1, 2022·Nature Ecology & Evolution·Brian Leung
Jan 1, 2022·Nature Ecology & Evolution·J Christopher D TerryAxel G Rossberg

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Software Mentioned

R Development Core Team
sql
R
BioTIME
sPlot

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