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BOCTOPUS: improved topology prediction of transmembrane β barrel proteins

Bioinformatics

Jan 17, 2012

Sikander Hayat, Arne Elofsson

Abstract

Transmembrane β barrel proteins (TMBs) are found in the outer membrane of Gram-negative bacteria, chloroplast and mitochondria. They play a major role in the translocation machinery, pore formation, membrane anchoring and ion exchange. TMBs are also promising targets for antimicrobial d...read more

Mentioned in this Paper

Support Vector Machines
Bacterial Proteins
Outer Membrane
Vaccines
Integral to Membrane
Chloroplasts
Computer Programs and Programming
Gram-Negative Bacteria
Mitochondria
Protein Conformation
Paper Details
References
  • References39
  • Citations28
1234
  • References39
  • Citations28
123

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Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions

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BOCTOPUS: improved topology prediction of transmembrane β barrel proteins

Bioinformatics

Jan 17, 2012

Sikander Hayat, Arne Elofsson

PMID: 22247276

DOI: 10.1093/bioinformatics/btr710

Abstract

Transmembrane β barrel proteins (TMBs) are found in the outer membrane of Gram-negative bacteria, chloroplast and mitochondria. They play a major role in the translocation machinery, pore formation, membrane anchoring and ion exchange. TMBs are also promising targets for antimicrobial d...read more

Mentioned in this Paper

Support Vector Machines
Bacterial Proteins
Outer Membrane
Vaccines
Integral to Membrane
Chloroplasts
Computer Programs and Programming
Gram-Negative Bacteria
Mitochondria
Protein Conformation

Similar Papers Found In These Feeds

Structural Biology: Biophysics

Structural Biology: Biophysics describes the study of structural biology using various biophysical techiniques such as imaging, computational modeling, etc. Discover the latest research on structrual biology here.

Chromosomal Translocation

Chromosomal Translocation occur when regions on two chromosomes breaks and swaps places or when a region is attached to another chromosome. Discover the latest research on Chromosomal Translocation here.

Related Papers

Bioinformatics

Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions

BioinformaticsJune 13, 2012
Sikander Hayat, Arne Elofsson
Bioinformatics

TMBB-DB: a transmembrane β-barrel proteome database

BioinformaticsJuly 31, 2012
Thomas C Freeman, William C Wimley
Paper Details
References
  • References39
  • Citations28
1234
  • References39
  • Citations28
123
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