Bovine rhinitis viruses are common in U.S. cattle with bovine respiratory disease

PloS One
Ben M HauseGary Anderson

Abstract

Bovine rhinitis viruses (BRV) are established etiological agents of bovine respiratory disease complex however little research into their epidemiology and ecology has been published for several decades. In the U.S., only bovine rhinitis A virus 1 (BRAV1) has been identified while bovine rhinitis A virus 2 (BRAV2) and bovine rhinitis B virus (BRBV) were previously only identified in England and Japan, respectively. Metagenomic sequencing of a nasal swab from a bovine respiratory disease (BRD) diagnostic submission from Kansas identified contigs with approximately 90% nucleotide similarity to BRAV2 and BRBV. A combination of de novo and templated assemblies using reference genomes yielded near complete BRAV2 and BRBV genomes. The near complete genome of bovine rhinitis A virus 1 (BRAV1) was also determined from a historical isolate to enable further molecular epidemiological studies. A 5'-nuclease reverse transcription PCR assay targeting the 3D polymerase gene was designed and used to screen 204 archived BRD clinical specimens. Thirteen (6.4%) were positive. Metagenomic sequencing of six positive samples identified mixed BRAV1/BRAV2, BRAV1/BRBV and BRAV2/BRBV infections for five samples. One sample showed infection only with BRA...Continue Reading

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Citations

Nov 20, 2015·The Journal of General Virology·Rachel M PalinskiBen M Hause
Mar 26, 2016·Frontiers in Genetics·Mikolaj M RaszekGraham S Plastow
Jul 30, 2015·The Journal of General Virology·Ben M HauseGary Anderson
Jun 18, 2016·Emerging Infectious Diseases·Ben M HauseRichard A Hesse
Nov 5, 2016·The Veterinary Journal·Gerard M MurrayJoseph P Cassidy
Jan 11, 2017·The Journal of Veterinary Medical Science·Mai KishimotoTetsuya Mizutani
May 13, 2017·Genome Announcements·Anne-Lie BlomströmMette Myrmel
Nov 18, 2017·Emerging Infectious Diseases·Bailey ArrudaGanwu Li
May 12, 2017·Journal of Virology·Pengcheng ShangYing Fang
Mar 24, 2016·The Journal of General Virology·Ben M HauseGary Anderson
May 18, 2019·Emerging Microbes & Infections·Bailey ArrudaKent Schwartz
Jan 23, 2020·Viruses·Kirsty T T KwokMarion P G Koopmans
Sep 25, 2020·MSphere·Ben M HauseJane Christopher-Hennings
May 1, 2021·Vaccines·Rachael Lynda BellSara Louise Cosby
Jun 22, 2021·Frontiers in Veterinary Science·Yi-Lun XieShao-Lun Zhai
Sep 17, 2021·Archives of Virology·Ben M HauseJane Christopher-Hennings
Sep 24, 2021·The Journal of General Virology·Ben M HauseJane Christopher-Hennings

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Datasets Mentioned

BETA
JN936206
PRJNA273738
SRP052864
SRR1776513
SRR1776531
SRR1776533
SRR1776541
SRR1776564
SRR1776524
SRR1776537

Methods Mentioned

BETA
PCR
reverse transcription PCR

Software Mentioned

CLC Genomics
BLASTN
BLAST
Mega6

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