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Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels

bioRxiv

Aug 1, 2014

Patrick DeelenLude Franke

Abstract

Given increasing numbers of RNA-seq samples in the public domain, we studied to what extent expression quantitative trait loci (eQTLs) and allele-specific expression (ASE) can be identified in public RNA-seq data while also deriving the genotypes from the RNA-seq reads. 4,978 human RNA-...read more

Mentioned in this Paper

HLA-DR2 Antigen
Sequencing
Laboratory
Locus
Endothelial neutrophil activating peptide
LCL-8
Public Health Practice
RNA
Pathogenic Organism
Ganglioside GQ
16
1
99
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Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels

bioRxiv

Aug 1, 2014

Patrick DeelenLude Franke

PMID: 990007633

DOI: 10.1101/007633

Abstract

Given increasing numbers of RNA-seq samples in the public domain, we studied to what extent expression quantitative trait loci (eQTLs) and allele-specific expression (ASE) can be identified in public RNA-seq data while also deriving the genotypes from the RNA-seq reads. 4,978 human RNA-...read more

Mentioned in this Paper

HLA-DR2 Antigen
Sequencing
Laboratory
Locus
Endothelial neutrophil activating peptide
LCL-8
Public Health Practice
RNA
Pathogenic Organism
Ganglioside GQ
16
1
99

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