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Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels

bioRxiv

Aug 1, 2014

Patrick DeelenLude H. Franke

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Abstract

Given increasing numbers of RNA-seq samples in the public domain, we studied to what extent expression quantitative trait loci (eQTLs) and allele-specific expression (ASE) can be identified in public RNA-seq data while also deriving the genotypes from the RNA-seq reads. 4,978 human RNA-...read more

Mentioned in this Paper

Gene Expression
Quantitative Trait Loci
Gene Mutant
Ganglioside GQ
Genome
RNA
HLA-DR2 Antigen
Genes
Endothelial neutrophil activating peptide
Cell Cluster
16
1
99
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  • Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels

    bioRxiv

    Aug 1, 2014

    Patrick DeelenLude H. Franke

    PMID: 990007633

    DOI: 10.1101/007633

    Abstract

    Given increasing numbers of RNA-seq samples in the public domain, we studied to what extent expression quantitative trait loci (eQTLs) and allele-specific expression (ASE) can be identified in public RNA-seq data while also deriving the genotypes from the RNA-seq reads. 4,978 human RNA-...read more

    Mentioned in this Paper

    Gene Expression
    Quantitative Trait Loci
    Gene Mutant
    Ganglioside GQ
    Genome
    16
    1
    99

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