Characterisation and validation of insertions and deletions in 173 patient exomes

PloS One
Francesco LescaiElia Stupka

Abstract

Recent advances in genomics technologies have spurred unprecedented efforts in genome and exome re-sequencing aiming to unravel the genetic component of rare and complex disorders. While in rare disorders this allowed the identification of novel causal genes, the missing heritability paradox in complex diseases remains so far elusive. Despite rapid advances of next-generation sequencing, both the technology and the analysis of the data it produces are in its infancy. At present there is abundant knowledge pertaining to the role of rare single nucleotide variants (SNVs) in rare disorders and of common SNVs in common disorders. Although the 1,000 genome project has clearly highlighted the prevalence of rare variants and more complex variants (e.g. insertions, deletions), their role in disease is as yet far from elucidated.We set out to analyse the properties of sequence variants identified in a comprehensive collection of exome re-sequencing studies performed on samples from patients affected by a broad range of complex and rare diseases (N = 173). Given the known potential for Loss of Function (LoF) variants to be false positive, we performed an extensive validation of the common, rare and private LoF variants identified, which ...Continue Reading

References

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Related Concepts

Genome-Wide Association Study
Exons
Genome
Gene Deletion Abnormality
Bio-Informatics
Single Nucleotide Polymorphism Database
Brain Diseases, Metabolic, Inborn
Genomics
Sequencing
Massively-Parallel Sequencing

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