Characterization and phylogenetic analysis of the mitochondrial genome of Shiraia bambusicola reveals special features in the order of pleosporales

PloS One
Xiao-Ye ShenCheng-Lin Hou

Abstract

Shiraia bambusicola P. Henn. is a pathogenic fungus of bamboo, and its fruiting bodies are regarded as folk medicine. We determined and analyzed its complete mitochondrial DNA sequence (circular DNA molecule of 39,030 bp, G + C content of 25.19%). It contains the typical genes encoding proteins involved in electron transport and coupled oxidative phosphorylation (nad1-6 and nad4L, cob and cox1-3), one ATP synthase subunit (atp6), 4 hypothetical proteins, and two genes for large and small rRNAs (rnl and rns). There is a set of 32 tRNA genes comprising all 20 amino acids, and these genes are evenly distributed on the two strands. Phylogenetic analyses based on concatenated mitochondrial proteins indicated that S. bambusicola clustered with members of the order Pleosporales, which is in agreement with previous results. The gene arrangements of Dothideomycetes species contained three regions of gene orders partitioned in their mitochondrial genomes, including block 1 (nad6-atp6), block 2 (nad1-cox3) and block 3 (genes around rns). S. bambusicola displayed unique special features that differed from the other Pleosporales species, especially in the coding regions around rns (trnR-trnY). Moreover, a comparison of gene orders in mitoch...Continue Reading

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Citations

Feb 18, 2018·Applied Microbiology and Biotechnology·Casley Borges de QueirozMarisa Vieira de Queiroz
Jul 3, 2019·Scientific Reports·Xiaoxia SongRuiheng Yang
May 7, 2020·Frontiers in Microbiology·Ning ZhaoShuang-Lin Chen

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Datasets Mentioned

BETA
AIDY01000043

Methods Mentioned

BETA
PCR

Software Mentioned

MrBayes
Gblocks
BLASTp
tRNAscan
ARWIN
BLAST
RNAWEASEL
CLC Genomics Workbench
REPuter
DAMBE

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