Characterization of Pingliang xiaoheidou (ZDD 11047), a soybean variety with resistance to soybean cyst nematode Heterodera glycines

Plant Molecular Biology
Wei GuoYong Q Jiao

Abstract

A novel QTL (qSCN-PL10) for SCN resistance and related candidate genes were identified in the soybean variety Pingliang xiaoheidou, and plant basal immunity seems to contribute to the SCN resistance. Soybean cyst nematode (SCN, Heterodera glycines Ichinohe) is one of the most devastating soybean pests worldwide. The development of host plant resistance represents an effective strategy to control SCN. However, owing to the lack of diversity of resistance genes in soybean varieties, further investigation is necessary to identify new SCN resistance genes. By analyzing the resistance phenotypes of soybean variety Pingliang xiaoheidou (Pingliang, ZDD 11047), we found that it exhibited the different resistance phenotypes from PI 88788 and Peking varieties. Because Pingliang variety contains the Rhg1-a (low copy) haplotype and lacks the resistant Rhg4 haplotype, novel quantitative trait locus might account for their SCN resistance. After sequencing parental lines (Magellan and Pingliang) and 200 F2:3 progenies, a high-density genetic map was constructed using the specific length amplified fragment sequencing method and qSCN-PL10 was identified as a novel locus for SCN resistance. Candidate genes were predicted by RNA sequencing (RNA-s...Continue Reading

References

Feb 16, 2002·Methods : a Companion to Methods in Enzymology·K J Livak, T D Schmittgen
May 11, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Eric BruckerBrian Diers
Aug 3, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·B GuoH T Nguyen
Nov 1, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Hans van OsHerman J van Eck
May 18, 2006·Annual Review of Phytopathology·T L NiblackG L Tylka
Nov 23, 2006·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Shawn M J WinterIstvan Rajcan
Dec 14, 2007·Nucleic Acids Research·Minoru KanehisaYoshihiro Yamanishi
Nov 19, 2008·Nature Reviews. Genetics·Zhong WangMichael Snyder
Feb 3, 2009·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Xiaolei WuHenry T Nguyen
Jun 6, 2009·Bioinformatics·Ruiqiang LiJun Wang
Feb 6, 2010·Genome Biology·Matthew D YoungAlicia Oshlack
Jun 19, 2010·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Tri D VuongHenry T Nguyen
Nov 24, 2011·Nucleic Acids Research·David M GoodsteinDaniel S Rokhsar
Dec 28, 2011·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Ahmed J AfzalDavid A Lightfoot
Oct 16, 2014·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Yongqing JiaoHenry T Nguyen
Mar 5, 2015·Molecular Ecology·Tong Geon LeeMatthew E Hudson
Jul 24, 2015·Nature Communications·Patricia ManosalvaDaniel F Klessig
Dec 10, 2015·Current Opinion in Virology·Yinzi LiAiming Wang
Feb 5, 2016·Journal of Experimental Botany·Julia HolbeinShahid Siddique
Feb 20, 2016·The New Phytologist·Marcella A TeixeiraIsgouhi Kaloshian
Mar 20, 2016·Journal of Experimental Botany·Irene SerranoSusana Rivas
Jun 11, 2017·Molecular Plant Pathology·Min Woo LeeFiona L Goggin
Jul 13, 2017·Proceedings of the National Academy of Sciences of the United States of America·Chih-Hang WuSophien Kamoun
Aug 16, 2017·Trends in Plant Science·Graham Noctor, Amna Mhamdi
Aug 18, 2017·PLoS Pathogens·Yan Wang, Klaas Bouwmeester
Oct 21, 2017·Journal of Experimental Botany·Syed Jehangir ShahShahid Siddique
Dec 8, 2017·Scientific Reports·Itzell E Hernández-SánchezJuan F Jiménez-Bremont

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Methods Mentioned

BETA
transgenic
RNA-seq
PCR
genotyping

Software Mentioned

KOBAS
SOAP aligner
R
eggNOG
SOAP2
GOseq R package
qtl

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