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chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts

bioRxiv

Nov 6, 2015

Birte Kehr, Páll Melsted

Abstract

Summary: Advances in sequencing capacity have lead to the generation of unprecedented amounts of genomic data. The processing of this data frequently leads to I/O bottlenecks, e.g. when analyzing a small genomic region across a large number of samples. The largest I/O burden is, however...read more

Mentioned in this Paper

Computer Software
Size
Genome
Nucleic Acid Sequencing
DDIT3 wt Allele
Toe Brachial Index
Joints
DDIT3 gene
Cocaine
Genomics
25
4
Paper Details
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chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts

bioRxiv

Nov 6, 2015

Birte Kehr, Páll Melsted

PMID: 990030825

DOI: 10.1101/030825

Abstract

Summary: Advances in sequencing capacity have lead to the generation of unprecedented amounts of genomic data. The processing of this data frequently leads to I/O bottlenecks, e.g. when analyzing a small genomic region across a large number of samples. The largest I/O burden is, however...read more

Mentioned in this Paper

Computer Software
Size
Genome
Nucleic Acid Sequencing
DDIT3 wt Allele
Toe Brachial Index
Joints
DDIT3 gene
Cocaine
Genomics
25
4

Similar Papers Found In These Feeds

BioRxiv Preprints

BioRxiv is the preprint server for biology, operated by Cold Spring Harbor Laboratory. Here are the latest biology preprint articles from bioRxiv.

Endoplasmic Reticulum Biochemistry

This feed focuses on endoplasmic reticulum biochemistry, and includes ER stress and the unfolded protein response.

Related Papers

bioRxiv

BamHash: a checksum program for verifying the integrity of sequence data

bioRxivMarch 2, 2015
Arna ÓskarsdóttirPáll Melsted
Paper Details
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