CIDRE: an illumination-correction method for optical microscopy

Nature Methods
Kevin SmithPeter Horvath

Abstract

Uneven illumination affects every image acquired by a microscope. It is often overlooked, but it can introduce considerable bias to image measurements. The most reliable correction methods require special reference images, and retrospective alternatives do not fully model the correction process. Our approach overcomes these issues for most optical microscopy applications without the need for reference images.

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Citations

Nov 22, 2015·Bioinformatics·Filippo PiccininiPeter Horvath
Mar 31, 2016·Journal of Microscopy·Peet KaskThora Pommerencke
Dec 7, 2016·Cytometry. Part a : the Journal of the International Society for Analytical Cytology·Vladimír UlmanPekka Ruusuvuori
Jun 9, 2017·Nature Communications·Tingying PengNassir Navab
Mar 16, 2017·Immunology and Cell Biology·Andrey Kan
Nov 23, 2017·Proceedings of the National Academy of Sciences of the United States of America·Limor FreifeldEdward S Boyden
Jul 31, 2018·The FEBS Journal·Helena Todorov, Yvan Saeys
Jan 18, 2018·Nature Communications·Csilla BraskoPeter Horvath
Feb 13, 2018·Nature Structural & Molecular Biology·Eviatar NatanSarah A Teichmann
Mar 11, 2018·Scientific Reports·Nadav YayonHermona Soreq
Sep 1, 2017·Nature Methods·Juan C CaicedoAnne E Carpenter
Oct 12, 2019·Communications Biology·Rebecca Gail CanterLi-Huei Tsai
Jul 2, 2017·Nucleic Acids Research·Gable M WadsworthHarold D Kim
Jul 10, 2018·BioMed Research International·Filippo Piccinini, Alessandro Bevilacqua
Oct 30, 2018·Angiogenesis·Javier A Montoya-ZegarraCornelia Halin
Oct 17, 2018·International Journal of Molecular Sciences·Pallavi ShindeTuhin Subhra Santra
Dec 25, 2019·Oxidative Medicine and Cellular Longevity·Krisztina N DugmonitsEdit Hermesz
Aug 6, 2020·Optics Express·Khalid A IbrahimSuliana Manley
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Aug 18, 2017·Biological Procedures Online·Filippo PiccininiAlessandro Bevilacqua
Aug 26, 2018·BMC Cancer·Susanne HultschOlli Kallioniemi
Mar 21, 2020·Scientific Reports·Nikita MoshkovPeter Horvath
Oct 22, 2020·Science·James L DalyYohei Yamauchi
Oct 12, 2020·Journal of Microscopy·Charles BrookshireKeigo Hirakawa
Sep 17, 2019·Chemico-biological Interactions·Payal ChakrabortyEdit Hermesz
Mar 3, 2021·Skin Research and Technology : Official Journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI)·Donghyun KimKwangtaek Kim
Jan 12, 2020·Communications Biology·Rebecca Gail CanterLi-Huei Tsai
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Jun 5, 2018·Bio-protocol·Gable M WadsworthHarold D Kim

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