ClickGene: an open cloud-based platform for big pan-cancer data genome-wide association study, visualization and exploration

BioData Mining
Jia-Hao BiKai Song

Abstract

Tremendous amount of whole-genome sequencing data have been provided by large consortium projects such as TCGA (The Cancer Genome Atlas), COSMIC and so on, which creates incredible opportunities for functional gene research and cancer associated mechanism uncovering. While the existing web servers are valuable and widely used, many whole genome analysis functions urgently needed by experimental biologists are still not adequately addressed. A cloud-based platform, named CG (ClickGene), therefore, was developed for DIY analyzing of user's private in-house data or public genome data without any requirement of software installation or system configuration. CG platform provides key interactive and customized functions including Bee-swarm plot, linear regression analyses, Mountain plot, Directional Manhattan plot, Deflection plot and Volcano plot. Using these tools, global profiling or individual gene distributions for expression and copy number variation (CNV) analyses can be generated by only mouse button clicking. The easy accessibility of such comprehensive pan-cancer genome analysis greatly facilitates data mining in wide research areas, such as therapeutic discovery process. Therefore, it fills in the gaps between big cancer g...Continue Reading

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Citations

Feb 2, 2021·Journal of Healthcare Engineering·Bo JianzhuZhang Yanshu
Mar 7, 2021·Briefings in Functional Genomics·Dariusz R AugustynDariusz Mrozek
Sep 11, 2021·Briefings in Bioinformatics·Piotr GrzesikDariusz Mrozek

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Software Mentioned

Legacy GDC
DIY analysing
Java
MySQL
SpringMVC
Dubbo
Nginx
jQuery
UCSC Cancer Genomics Browser
ECharts

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