Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome

Molecular Phylogenetics and Evolution
Sereina RutschmannMichael T Monaghan


The study of processes driving diversification requires a fully sampled and well resolved phylogeny, although a lack of phylogenetic markers remains a limitation for many non-model groups. Multilocus approaches to the study of recent diversification provide a powerful means to study the evolutionary process, but their application remains restricted because multiple unlinked loci with suitable variation for phylogenetic or coalescent analysis are not available for most non-model taxa. Here we identify novel, putative single-copy nuclear DNA (nDNA) phylogenetic markers to study the colonization and diversification of an aquatic insect species complex, Cloeon dipterum L. 1761 (Ephemeroptera: Baetidae), in Macaronesia. Whole-genome sequencing data from one member of the species complex were used to identify 59 nDNA loci (32,213 base pairs), followed by Sanger sequencing of 29 individuals sampled from 13 islands of three Macaronesian archipelagos. Multispecies coalescent analyses established six putative species. Three island species formed a monophyletic clade, with one species occurring on the Azores, Europe and North America. Ancestral state reconstruction indicated at least two colonization events from the mainland (to the Canar...Continue Reading


Jul 28, 2016·Molecular Ecology Resources·Sereina RutschmannMichael T Monaghan
Dec 29, 2016·The Science of the Total Environment·Celso GarciaRamon J Batalla
Apr 4, 2017·Biological Reviews of the Cambridge Philosophical Society·Katherine L MoonCeridwen I Fraser
Jun 19, 2019·Insects·Luke M JacobusMichel Sartori
Jul 31, 2018·ZooKeys·Jean-Luc GattolliatHathal M Al Dhafer


Jan 1, 1969·Gerontologia Clinica·J Maddison, R N Maddison
Mar 15, 1994·Proceedings of the National Academy of Sciences of the United States of America·Rosemary G GillespieS R Palumbi
Mar 3, 1998·Biological Journal of the Linnean Society·C F A Brunton, G D D Hurst
Feb 17, 2000·Trends in Ecology & Evolution·I JuanGodfrey M Hewitt
Mar 20, 2001·American Journal of Human Genetics·Matthew StephensPeter Donnelly
Dec 1, 2001·Annual Review of Entomology·Rosemary G Gillespie, George K Roderick
Apr 5, 2003·Molecular Ecology·De-Xing Zhang, Godfrey M Hewitt
Oct 24, 2003·American Journal of Human Genetics·Matthew Stephens, Peter Donnelly
Jan 22, 2004·Bioinformatics·Emmanuel ParadisKorbinian Strimmer
Apr 23, 2005·Nature·Brent C Emerson, Niclas Kolm
Apr 29, 2005·Evolution; International Journal of Organic Evolution·Brent C Emerson, Pedro Oromí
Aug 13, 2005·Proceedings. Biological Sciences·Michael T MonaghanAlfried P Vogler
Apr 19, 2006·Proceedings. Biological Sciences·Michael T MonaghanAlfried P Vogler
May 31, 2006·PLoS Genetics·James H Degnan, Noah A Rosenberg
Mar 17, 2007·Systematic Biology·Laura Salter Kubatko, James H Degnan
Nov 13, 2007·BMC Evolutionary Biology·Alexei J Drummond, Andrew Rambaut
Jan 17, 2009·Evolution; International Journal of Organic Evolution·Scott V Edwards
Feb 13, 2009·Nature·Jonathan B Losos, Robert E Ricklefs
Mar 25, 2009·Trends in Ecology & Evolution·James H Degnan, Noah A Rosenberg
Aug 29, 2009·Molecular Biology and Evolution·Sabrina SimonHeike Hadrys
Nov 13, 2009·Molecular Biology and Evolution·Joseph Heled, Alexei J Drummond
Apr 28, 2010·Bioinformatics·Jeet Sukumaran, Mark T Holder
Feb 1, 2009·Systematic Biology·James H DegnanNoah A Rosenberg
Jun 9, 2010·Systematic Biology·Liang Liu, Scott V Edwards
Nov 1, 2008·Molecular Ecology Resources·Ryan J HarriganMichael D Sorenson
Feb 10, 2012·Molecular Biology and Evolution·Robert LanfearStephane Guindon
Feb 24, 2012·Systematic Biology·Fredrik RonquistJohn P Huelsenbeck
Jun 6, 2012·PloS One·Jeffrey M WebbPaul D N Hebert
Aug 1, 2012·Nature Methods·Diego DarribaDavid Posada
Aug 8, 2012·IEEE/ACM Transactions on Computational Biology and Bioinformatics·James H DegnanTanja Stadler
Jan 19, 2013·Molecular Biology and Evolution·Kazutaka Katoh, Daron M Standley
Mar 7, 2013·Systematic Biology·Claire MorvanChristophe J Douady

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