Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Frontiers in Microbiology
Linda WampachPaul Wilmes

Abstract

Perturbations to the colonization process of the human gastrointestinal tract have been suggested to result in adverse health effects later in life. Although much research has been performed on bacterial colonization and succession, much less is known about the other two domains of life, archaea, and eukaryotes. Here we describe colonization and succession by bacteria, archaea and microeukaryotes during the first year of life (samples collected around days 1, 3, 5, 28, 150, and 365) within the gastrointestinal tract of infants delivered either vaginally or by cesarean section and using a combination of quantitative real-time PCR as well as 16S and 18S rRNA gene amplicon sequencing. Sequences from organisms belonging to all three domains of life were detectable in all of the collected meconium samples. The microeukaryotic community composition fluctuated strongly over time and early diversification was delayed in infants receiving formula milk. Cesarean section-delivered (CSD) infants experienced a delay in colonization and succession, which was observed for all three domains of life. Shifts in prokaryotic succession in CSD infants compared to vaginally delivered (VD) infants were apparent as early as days 3 and 5, which were ch...Continue Reading

References

Jul 1, 1990·Journal of Clinical Microbiology·N BelayL Daniels
Dec 1, 1990·Journal of Medical Microbiology·R J van KetelL van Alphen
Jun 1, 1997·Journal of Clinical Microbiology·H EinseleU Schumacher
Apr 15, 1999·Clinical and Experimental Allergy : Journal of the British Society for Allergy and Clinical Immunology·B BjörksténM Mikelsaar
Jun 28, 2001·Journal of Clinical Microbiology·F MartineauM G Bergeron
Jun 29, 2002·Journal of Clinical Microbiology·Antonella LupettiSonia Senesi
Mar 19, 2003·The Journal of Allergy and Clinical Immunology·Shinichi WatanabeMegumi Kumemura
Mar 10, 2004·Springer Seminars in Immunopathology·Bengt Björkstén
Jul 8, 2005·Applied and Environmental Microbiology·Noah FiererRobert B Jackson
Sep 29, 2005·Pediatric Research·Ricardo A CaicedoJosef Neu
Mar 1, 2006·International Journal of Clinical Pharmacology and Therapeutics·G M Pacifici
Aug 3, 2006·Pediatrics·John PendersEllen E Stobberingh
Dec 22, 2006·Nature·Peter J TurnbaughJeffrey I Gordon
Jun 15, 2007·Proceedings of the National Academy of Sciences of the United States of America·Buck S SamuelJeffrey I Gordon
Jun 26, 2007·Applied and Environmental Microbiology·Qiong WangJames R Cole
Jun 28, 2007·PLoS Biology·Chana PalmerPatrick O Brown
Nov 10, 2007·Current Gastroenterology Reports·Samuli Rautava, W Allan Walker
Nov 27, 2007·Bulletin of the World Health Organization·Guo SufangR William Stones
Feb 19, 2008·Research in Microbiology·Esther JiménezJuan M Rodríguez
Mar 11, 2008·The American Journal of Clinical Nutrition·Marko KalliomäkiErika Isolauri
Jun 28, 2008·Scandinavian Journal of Gastroenterology·Stephan J OttStefan Schreiber
Jul 1, 2008·Nature Reviews. Microbiology·Rudolf K ThauerReiner Hedderich
Aug 22, 2008·The Journal of Nutrition·Giacomo BiasucciGünther Boehm
Mar 6, 2010·Gastroenterology Clinics of North America·Dang M Nguyen, Hashem B El-Serag
Mar 11, 2010·The American Journal of Gastroenterology·Davide RoccarinaAntonio Gasbarrini
May 11, 2010·Nutrition Research Reviews·Isabelle Le Huërou-LuronGaëlle Boudry
Jun 23, 2010·Proceedings of the National Academy of Sciences of the United States of America·Maria G Dominguez-BelloRob Knight
Jul 30, 2010·Proceedings of the National Academy of Sciences of the United States of America·Jeremy E KoenigRuth E Ley
Aug 4, 2010·Proceedings of the National Academy of Sciences of the United States of America·Angela M ZivkovicDavid A Mills
Oct 30, 2010·Integrative Biology : Quantitative Biosciences From Nano to Macro·Alaa A A AljabaliDavid J Evans
Nov 6, 2010·Journal of Obstetrics and Gynaecology Canada : JOGC = Journal D'obstétrique Et Gynécologie Du Canada : JOGC·Julie van SchalkwykUNKNOWN Society of Obstetricians and Gynaecologists of Canada Infectious Diseases Committee
Feb 15, 2011·Proceedings of the National Academy of Sciences of the United States of America·Elizabeth E HansenJeffrey I Gordon
Apr 8, 2011·The ISME Journal·Daniel Pr HerlemannAnders F Andersson
Jun 28, 2011·Journal of Microbiological Methods·Tristano Bacchetti De GregorisJ Grant Burgess
Dec 1, 2011·FEMS Microbiology Ecology·Silvia ArboleyaMiguel Gueimonde
Dec 14, 2011·The Journal of Allergy and Clinical Immunology·Thomas R AbrahamssonMaria C Jenmalm
Apr 6, 2012·PloS One·Camilla Hartmann Friis HansenAxel Kornerup Hansen

❮ Previous
Next ❯

Citations

Mar 3, 2018·Applied Microbiology and Biotechnology·Prem Prashant ChaudharyJørgen Schlundt
Mar 3, 2018·Nutrients·Clara Yieh Lin ChongJustin M O'Sullivan
Nov 14, 2017·Microbes and Environments·Ethan T HillmanCindy H Nakatsu
Oct 5, 2019·The Journal of Eukaryotic Microbiology·Katarzyna B Hooks, Maureen A O'Malley
Nov 6, 2018·FEMS Microbiology Ecology·Vanesa Natalin Rocha MartinChristophe Lacroix
Nov 24, 2019·Microorganisms·Hongyu ChengWentao Ma
Dec 14, 2019·Immunological Reviews·Miika ArvonenMatthew L Stoll
Apr 16, 2020·International Journal of Molecular Sciences·Mario MatijašićDonatella Verbanac
Jul 13, 2019·Archives of Disease in Childhood. Fetal and Neonatal Edition·Petra Zimmermann, Nigel Curtis
Aug 27, 2017·Movement Disorders : Official Journal of the Movement Disorder Society·Anna Heintz-BuschartPaul Wilmes
Oct 12, 2019·Journal of Developmental Origins of Health and Disease·Lisa F Stinson
Sep 16, 2019·Clinical Reviews in Allergy & Immunology·Youssouf SeremeJoana Vitte
Jul 19, 2020·Annual Review of Nutrition·William D FiersIliyan D Iliev
Mar 30, 2018·Frontiers in Microbiology·Maria C OpazoClaudia A Riedel
Dec 6, 2018·Foods·Victoria BellTito Fernandes
Feb 24, 2019·European Journal of Clinical Microbiology & Infectious Diseases : Official Publication of the European Society of Clinical Microbiology·E SogodogoGhiles Grine
Dec 14, 2018·Nature Microbiology·Josie Libertucci, Vincent B Young
Apr 15, 2020·Nature Microbiology·Kyle BittingerGary D Wu
Oct 3, 2018·Frontiers in Integrative Neuroscience·Shan LiangFeng Jin
Feb 15, 2019·Frontiers in Immunology·Kieran G Meade, Cliona O'Farrelly
Mar 13, 2019·Nature Reviews. Immunology·Ashwin N SkellyKenya Honda
Dec 11, 2019·Scientific Reports·Amadou Hamidou TogoDidier Raoult
Oct 17, 2019·The Australian & New Zealand Journal of Obstetrics & Gynaecology·Lisa F Stinson, Matthew S Payne
Nov 27, 2019·PLoS Biology·Suzanne L IshaqHannah F Tavalire
May 11, 2018·The Pediatric Infectious Disease Journal·Petra Zimmermann, Nigel Curtis
Oct 17, 2018·Proceedings of the National Academy of Sciences of the United States of America·Alexandra Castillo-RuizNancy G Forger
May 5, 2018·Protein & Cell·Zeneng Wang, Yongzhong Zhao
Jun 25, 2019·Frontiers in Microbiology·Lisa F StinsonJeffrey A Keelan
Dec 24, 2019·Frontiers in Microbiology·Manuela R PausanChristine Moissl-Eichinger
Dec 16, 2019·Journal of Neuroinflammation·Kazi Farhana Afroz, Karina Alviña
Jul 22, 2020·Reviews in Endocrine & Metabolic Disorders·Nathalie M DelzenneAudrey M Neyrinck
Jul 25, 2020·Nature Communications·N van BestM W Hornef

❮ Previous
Next ❯

Methods Mentioned

BETA
cesarean section
amplicon sequencing
PCR

Software Mentioned

LotuS
Roche LightCycler 480
vegan
DESeq2
FASTQC
R
Adobe Illustrator
R package “ phyloseq ”
R Development Core Team
R package “ cluster ”

Related Concepts

Related Feeds

Cat-scratch disease

Cat-scratch disease, a relatively common infectious disease, is caused by Bartonella henselae and characterized by a fever and regional lymphadenitis. Here is the latest research.

Antifungals (ASM)

An antifungal, also known as an antimycotic medication, is a pharmaceutical fungicide or fungistatic used to treat and prevent mycosis such as athlete's foot, ringworm, candidiasis, cryptococcal meningitis, and others. Discover the latest research on antifungals here.

Bartonellosis

Bartonellosis is an infection caused by bacteria in the genus Bartonella and can present as a variety of diseases depending on the organism involved. While asymptomatic infection has been reported, immunocompromised individuals are more susceptible to severe infection. Find the latest research on bartonellosis here.

Antifungals

An antifungal, also known as an antimycotic medication, is a pharmaceutical fungicide or fungistatic used to treat and prevent mycosis such as athlete's foot, ringworm, candidiasis, cryptococcal meningitis, and others. Discover the latest research on antifungals here.

Archaeogenetics

Recent advances in genomic sequencing has led to the discovery of new strains of Archaea and shed light on their evolutionary history. Discover the latest research on Archaeogenetics here.

Related Papers

The Journal of Maternal-fetal & Neonatal Medicine : the Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians
Diana A ChernikovaJuliette C Madan
© 2022 Meta ULC. All rights reserved