Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

BMC Genomics
Jose Díaz-RiquelmeVojislava Grbic

Abstract

The two-spotted spider mite, Tetranychus urticae, is an extreme generalist plant pest. Even though mites can feed on many plant species, local mite populations form host races that do not perform equally well on all potential hosts. An acquisition of the ability to evade plant defenses is fundamental for mite's ability to use a particular plant as a host. Thus, understanding the interactions between the plant and mites with different host adaptation status allows the identification of functional plant defenses and ways mites can evolve to avoid them. The grapevine genome-wide transcriptional responses to spider mite strains that are non-adapted and adapted to grapevine as a host were examined. Comparative transcriptome analysis of grapevine responses to these mite strains identified the existence of weak responses induced by the feeding of the non-adapted strain. In contrast, strong but ineffective induced defenses were triggered upon feeding of the adapted strain. A comparative meta-analysis of Arabidopsis, tomato and grapevine responses to mite feeding identified a core of 36 highly conserved genes involved in the perception, regulation and metabolism that were commonly induced in all three species by mite herbivory. This stu...Continue Reading

References

Sep 1, 1997·Nucleic Acids Research·S F AltschulD J Lipman
Mar 17, 1999·Proceedings of the National Academy of Sciences of the United States of America·R OverbeekN Maltsev
Apr 12, 2002·Nature·Richard O MusserGary W Felton
Sep 12, 2002·Annual Review of Plant Biology·André Kessler, Ian T Baldwin
Nov 12, 2003·The Journal of Experimental Biology·Hans Merzendorfer, Lars Zimoch
Jun 9, 2005·BMC Bioinformatics·Seon-Young Kim, David J Volsky
Jan 5, 2006·Journal of Agricultural and Food Chemistry·Roque BruMaria Angeles Pedreño
May 2, 2006·Statistical Applications in Genetics and Molecular Biology·Gordon K Smyth
Jul 11, 2006·Proceedings of the National Academy of Sciences of the United States of America·Hanae KakuNaoto Shibuya
Oct 13, 2006·Proceedings of the National Academy of Sciences of the United States of America·Fabrice RébeilléStéphane Ravanel
Feb 8, 2007·Plant & Cell Physiology·Ingrid RoxrudHilde-Gunn Opsahl-Sorteberg
Aug 24, 2007·Journal of Evolutionary Biology·S MagalhãesI Olivieri
Aug 28, 2007·Nature·Olivier JaillonUNKNOWN French-Italian Public Consortium for Grapevine Genome Characterization
Jan 25, 2008·Proceedings of the National Academy of Sciences of the United States of America·Laurens PauwelsAlain Goossens
Jul 16, 2008·Proceedings of the National Academy of Sciences of the United States of America·Navdeep S MuttiGerald R Reeck
Jun 6, 2009·Plant Biotechnology Journal·Annalisa D'IntronoGiovanna Giovinazzo
Oct 30, 2009·Phytochemical Analysis : PCA·Mohammad MirnezhadPeter G L Klinkhamer
Oct 1, 2008·Plant Signaling & Behavior·Laurens Pauwels, Alain Goossens
May 7, 2010·Plant, Cell & Environment·Damla D BilginEvan H DeLucia
Sep 1, 2002·Molecular Plant Pathology·Richard A DixonLiangjiang Wang
Jun 25, 2010·Journal of Insect Science·Tomas Erban, Jan Hubert
Jan 13, 2011·The Plant Journal : for Cell and Molecular Biology·Pei-Chi LinJyan-Chyun Jang
Jun 21, 2011·Current Opinion in Plant Biology·Saskia A Hogenhout, Jorunn I B Bos
Nov 16, 2011·Nucleic Acids Research·Sudhansu DashJulie A Dickerson
Nov 25, 2011·Nature·Miodrag GrbićYves Van de Peer
Jan 17, 2012·Current Biology : CB·Karolina M Pajerowska-MukhtarXinnian Dong
Apr 3, 2012·Trends in Plant Science·Luke G Barrett, Martin Heil
Aug 21, 2012·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·María SalinasJuan Capel
Oct 30, 2012·Bioinformatics·Alexander DobinThomas R Gingeras
Nov 22, 2012·Proceedings of the National Academy of Sciences of the United States of America·Petra M BleekerRobert C Schuurink
Dec 14, 2012·International Journal of Molecular Sciences·Joris J GlasMerijn R Kant

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Citations

Aug 12, 2016·Frontiers in Plant Science·Nicolas BensoussanVojislava Grbić
Sep 1, 2017·Molecular Plant-microbe Interactions : MPMI·Cristina RiojaVojislava Grbic
Nov 10, 2017·Experimental & Applied Acarology·A K Barczak-BrzyżekB Karpińska
Dec 13, 2017·Ecology Letters·Katrien Van PetegemDries Bonte
Apr 11, 2020·Plants·M Estrella SantamariaIsabel Diaz
Dec 20, 2018·Frontiers in Plant Science·Enrico de LilloCarlo Duso
Oct 24, 2018·International Journal of Molecular Sciences·Bernardus C J SchimmelMerijn R Kant
Jun 27, 2017·Frontiers in Plant Science·M Estrella SantamaríaIsabel Diaz
Jul 5, 2017·Proceedings of the National Academy of Sciences of the United States of America·Astrid BryonThomas Van Leeuwen
Feb 15, 2019·International Journal of Molecular Sciences·Jason A WulffAdrianna Szczepaniec
Sep 29, 2017·Frontiers in Plant Science·Mercedes Diaz-MendozaManuel Martinez
Apr 4, 2018·Experimental & Applied Acarology·Saeid Javadi KhederiGiovanni Luigi Bruno
Apr 24, 2018·Frontiers in Plant Science·M E SantamariaManuel Martinez
Oct 6, 2016·Molecular & Cellular Proteomics : MCP·Wim JonckheereThomas Van Leeuwen
Apr 4, 2021·International Journal of Molecular Sciences·Mahnaz KianiAdrianna Szczepaniec

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Datasets Mentioned

BETA
SRP067967

Methods Mentioned

BETA
RNA-Seq
PCA
transgenic

Software Mentioned

Blast2GO
topGO
Gene Set Analysis ( GSA )
voom
RMA
Gimp
HTSeq
STAR aligner
Affymetrix
limma

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