Comparative Genomic Analysis of Vibrio diabolicus and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species

Frontiers in Microbiology
Jeffrey W TurnerMark S Strom

Abstract

Vibrio is a diverse genus of Gammaproteobacteria autochthonous to marine environments worldwide. Vibrio diabolicus and V. antiquarius were originally isolated from deep-sea hydrothermal fields in the East Pacific Rise. These species are closely related to members of the Harveyi clade (e.g., V. alginolyticus and V. parahaemolyticus) that are commonly isolated from coastal systems. This study reports the discovery and draft genome sequence of a novel isolate (Vibrio sp. 939) cultured from Pacific oysters (Crassostrea gigas). Questions surrounding the identity of Vibrio sp. 939 motivated a genome-scale taxonomic analysis of the Harveyi clade. A 49-genome phylogeny based on 1,109 conserved coding sequences and a comparison of average nucleotide identity (ANI) values revealed a clear case of synonymy between Vibrio sp. 939, V. diabolicus Art-Gut C1 and CNCM I-1629, V. antiquarius EX25 and four V. alginolyticus strains (E0666, FF273, TS13, and V2). This discovery expands the V. diabolicus species and makes available six additional genomes for comparative genomic analyses. The distribution of the expanded species is thought to be global given the range of isolation sources (horse mackerel, seawater, sediment, dentex, oyster, artemia a...Continue Reading

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Citations

Aug 2, 2020·Applied and Environmental Microbiology·Bridget E ConleyJeffrey A Gralnick
Feb 4, 2021·Environmental Microbiology Reports·Mengzhao XuQichao Tu
Jun 21, 2020·Microbial Pathogenesis·Hussein AnaniPierre-Edouard Fournier
Jun 8, 2021·Antimicrobial Agents and Chemotherapy·Ming LiuRuichao Li

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Datasets Mentioned

BETA
AOJB00000000

Software Mentioned

Galaxy
BLAST Ring Image Generator ( BRIG )
FastQC
Velvet
ModelFinder
Cutadapt
KmerGenie
IQ
blastp
trimAl

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